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<csml:comments>
<csml:comment type="text">










</csml:comment>
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<csml:comment type="text">








</csml:comment>
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<csml:comment type="text">








</csml:comment>
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</csml:processKinetic>
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<csml:comments>
<csml:comment type="text">









PMID: 18029230
These microbial components include bacterial lipopolysaccharide (LPS; TLR4 ligand), lipoproteins (TLR2 ligand), flagellin (TLR5 ligand), bacterial CpG DNA (TLR9 ligand), viral single-stranded RNA (TLR7 ligand) and viral double-stranded RNA (TLR3 ligand)

PMID: 18029230
LR2 recognizes various PAMPs, including peptidoglycan from Gram-positive bacteria, lipoarabinomannan from mycobacteria, hemagglutinin protein from measles virus and tGPI-mutin from Trypanosoma.</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c6" name="c6" refID="e11" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
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<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:connector>
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<csml:comments>
<csml:comment type="text">









PMID: 18029230
These microbial components include bacterial lipopolysaccharide (LPS; TLR4 ligand), lipoproteins (TLR2 ligand), flagellin (TLR5 ligand), bacterial CpG DNA (TLR9 ligand), viral single-stranded RNA (TLR7 ligand) and viral double-stranded RNA (TLR3 ligand)

PMID: 18029230
LR2 recognizes various PAMPs, including peptidoglycan from Gram-positive bacteria, lipoarabinomannan from mycobacteria, hemagglutinin protein from measles virus and tGPI-mutin from Trypanosoma.</csml:comment>
</csml:comments>
</csml:process>
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</csml:comment>
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</csml:comment>
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</csml:connector>
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<csml:comments>
<csml:comment type="text">









PMID: 18029230
These microbial components include bacterial lipopolysaccharide (LPS; TLR4 ligand), lipoproteins (TLR2 ligand), flagellin (TLR5 ligand), bacterial CpG DNA (TLR9 ligand), viral single-stranded RNA (TLR7 ligand) and viral double-stranded RNA (TLR3 ligand)

PMID: 18029230
LR2 recognizes various PAMPs, including peptidoglycan from Gram-positive bacteria, lipoarabinomannan from mycobacteria, hemagglutinin protein from measles virus and tGPI-mutin from Trypanosoma.</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:connector>
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</csml:comment>
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</csml:connector>
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</csml:comment>
</csml:comments>
</csml:connector>
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PMID: 18029230
These microbial components include bacterial lipopolysaccharide (LPS; TLR4 ligand), lipoproteins (TLR2 ligand), flagellin (TLR5 ligand), bacterial CpG DNA (TLR9 ligand), viral single-stranded RNA (TLR7 ligand) and viral double-stranded RNA (TLR3 ligand)

PMID: 18029230
LR2 recognizes various PAMPs, including peptidoglycan from Gram-positive bacteria, lipoarabinomannan from mycobacteria, hemagglutinin protein from measles virus and tGPI-mutin from Trypanosoma.</csml:comment>
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PMID: 18029230
These microbial components include bacterial lipopolysaccharide (LPS; TLR4 ligand), lipoproteins (TLR2 ligand), flagellin (TLR5 ligand), bacterial CpG DNA (TLR9 ligand), viral single-stranded RNA (TLR7 ligand) and viral double-stranded RNA (TLR3 ligand)

PMID: 18029230
TLR2/1 and TLR2/6 discriminate the lipid structures between triacyl- and diacyl-lipopeptide, respectively</csml:comment>
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PMID: 18029230
These microbial components include bacterial lipopolysaccharide (LPS; TLR4 ligand), lipoproteins (TLR2 ligand), flagellin (TLR5 ligand), bacterial CpG DNA (TLR9 ligand), viral single-stranded RNA (TLR7 ligand) and viral double-stranded RNA (TLR3 ligand)

PMID: 18029230
TLR2/1 and TLR2/6 discriminate the lipid structures between triacyl- and diacyl-lipopeptide, respectively</csml:comment>
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PMID: 18029230
These microbial components include bacterial lipopolysaccharide (LPS; TLR4 ligand), lipoproteins (TLR2 ligand), flagellin (TLR5 ligand), bacterial CpG DNA (TLR9 ligand), viral single-stranded RNA (TLR7 ligand) and viral double-stranded RNA (TLR3 ligand)

PMID: 18029230
TLR2/1 and TLR2/6 discriminate the lipid structures between triacyl- and diacyl-lipopeptide, respectively</csml:comment>
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PMID: 18029230
These microbial components include bacterial lipopolysaccharide (LPS; TLR4 ligand), lipoproteins (TLR2 ligand), flagellin (TLR5 ligand), bacterial CpG DNA (TLR9 ligand), viral single-stranded RNA (TLR7 ligand) and viral double-stranded RNA (TLR3 ligand)
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PMID: 18029230
TLR4 recognizes bacterial LPS and synthetic MPLA as well as envelope proteins from respiratory syncytial virus (RSV) and mouse mammary tumor virus (MMTV).</csml:comment>
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PMID: 18029230
TLR4 recognizes bacterial LPS and synthetic MPLA as well as envelope proteins from respiratory syncytial virus (RSV) and mouse mammary tumor virus (MMTV).</csml:comment>
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PMID: 18029230
TLR5 detects bacterial flagellin expressed in intestinal epithelial cells as well as CD11c-positive lamina propria in DCs</csml:comment>
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PMID: 18029230
TLR5 detects bacterial flagellin expressed in intestinal epithelial cells as well as CD11c-positive lamina propria in DCs</csml:comment>
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PMID: 18029230
In mice, TLR11 recognizes as yet unknown components of uropathogenic bacteria, and a profilin-like molecule of Toxoplasma gondii.</csml:comment>
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PMID: 18029230
In mice, TLR11 recognizes as yet unknown components of uropathogenic bacteria, and a profilin-like molecule of Toxoplasma gondii.</csml:comment>
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PMID: 18029230
TLR3, 7, 8 and 9, which are localized to endosomes, detect nucleic acids derived from viruses and bacteria. 

PMID: 18029230
TLR3 recognizes dsRNA, which is produced by many viruses during replication, and poly IC. </csml:comment>
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PMID: 18029230
TLR3, 7, 8 and 9, which are localized to endosomes, detect nucleic acids derived from viruses and bacteria. 

PMID: 18029230
TLR3 recognizes dsRNA, which is produced by many viruses during replication, and poly IC. </csml:comment>
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PMID: 18029230
TLR7 recognizes ssRNA derived from various viruses and synthetic imidazoquinolines with antitumor properties.</csml:comment>
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PMID: 18029230
TLR7 recognizes ssRNA derived from various viruses and synthetic imidazoquinolines with antitumor properties.</csml:comment>
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PMID:18029230
Human TLR8 also participates in the recognition of ssRNA and imidazoquinolines, whereas the function of mouse TLR8 remains unclear.</csml:comment>
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PMID:18029230
Human TLR8 also participates in the recognition of ssRNA and imidazoquinolines, whereas the function of mouse TLR8 remains unclear.</csml:comment>
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PMID: 18029230
LR9 recognizes CpG DNA motifs present in bacterial and viral genomes as well as non-nucleic acids such as hemozoin from Plasmodium. </csml:comment>
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PMID: 18029230
LR9 recognizes CpG DNA motifs present in bacterial and viral genomes as well as non-nucleic acids such as hemozoin from Plasmodium. </csml:comment>
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PMID: 18029230,17072327
The most frequently activated form of NF-&#954;B in TLR signaling is a heterodimer composed of RelA and p50</csml:comment>
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PMID: 18029230
Under unstimulated conditions, NF-&#954;B is sequestered in the cytoplasm as an inactive form by interaction with a family of inhibitor proteins known as I&#954;B proteins

PMID: 18029230
The RelA&#8211;p50 heterodimer is kept in the cytoplasm as a latent and inactive form by interaction with I&#954;B proteins in unstimulated cells</csml:comment>
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PMID: 18029230
Stimulation with TLR ligands triggers the rapid phosphorylation of specific serine residues of I&#954;B proteins by a multiprotein complex termed the IKK complex, which consists of two catalytic components, IKKgreek small letter alpha and IKK&#946;, and a regulatory component, NEMO (NF-&#954;B essential modifier, also known as IKK&#947;).</csml:comment>
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indirect</csml:comment>
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PMID: 18029230
Stimulation with TLR ligands triggers the rapid phosphorylation of specific serine residues of I&#954;B proteins by a multiprotein complex termed the IKK complex, which consists of two catalytic components, IKKgreek small letter alpha and IKK&#946;, and a regulatory component, NEMO (NF-&#954;B essential modifier, also known as IKK&#947;).</csml:comment>
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PMID: 18029230
Phosphorylated I&#954;B proteins are subsequently polyubiquitinated and degraded by the 26S proteasome, allowing NF-&#954;B to move into the nucleus.</csml:comment>
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indirect</csml:comment>
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PMID: 18029230
Phosphorylated I&#954;B proteins are subsequently polyubiquitinated and degraded by the 26S proteasome, allowing NF-&#954;B to move into the nucleus.</csml:comment>
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PMID: 18029230
Phosphorylated I&#954;B proteins are subsequently polyubiquitinated and degraded by the 26S proteasome, allowing NF-&#954;B to move into the nucleus.</csml:comment>
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indirect</csml:comment>
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PMID: 18029230,17072327
This pathway is called the &#8216;canonical pathway&#8217; and is responsible for TLR-mediated induction of inflammatory cytokines such as tumor necrosis factor-greek small letter alpha (TNF-greek small letter alpha) and IL-6</csml:comment>
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PMID: 18029230,17072327
This pathway is called the &#8216;canonical pathway&#8217; and is responsible for TLR-mediated induction of inflammatory cytokines such as tumor necrosis factor-greek small letter alpha (TNF-greek small letter alpha) and IL-6</csml:comment>
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PMID: 18029230
TLR4 uses four adaptors, MyD88, TIRAP, TRIF and TRAM. TLR3 uses TRIF as the sole adaptor

PMID: 18029230
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PMID: 18029230
TLR4 uses four adaptors, MyD88, TIRAP, TRIF and TRAM. TLR3 uses TRIF as the sole adaptor

PMID: 18029230
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indirect</csml:comment>
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PMID: 18029230,17496917,16858426
TRAF6 is a RING-domain E3 ubiquitin ligase, and together with E2, Ubc13 and Uev1A, it promotes Lys63-linked polyubiquitination of target proteins, including TRAF6 itself and NEMO</csml:comment>
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PMID: 18029230
The activated TAK1 complex then activates the IKK complex consisting of IKKgreek small letter alpha, IKK&#946; and NEMO, which catalyzes the phosphorylation of I&#954;B proteins (P)</csml:comment>
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PMID: 18029230
Simultaneously, the TAK1 complex activates the MAPK pathway, which results in the phosphorylation (P) and activation of AP-1

PMID: 18029230,17496917
Ubiquitinated NEMO and TRAF6 subsequently recruit a protein kinase complex involving TAK1 (transforming growth factor-&#946;-activated kinase-1) and TABs (TAK1 binding proteins) (TAB1, TAB2 and TAB3), Ubiquitin-mediated activation of TAK1 and IKK, which then activates two distinct pathways involving the IKK complex and the mitogen-activated protein kinase (MAPK) (ERK, JNK, p38) pathway </csml:comment>
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PMID: 18029230
NF-&#954;B and AP-1 control inflammatory responses through the induction of inflammatory cytokines</csml:comment>
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indirect</csml:comment>
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PMID: 18029230
NF-&#954;B and AP-1 control inflammatory responses through the induction of inflammatory cytokines</csml:comment>
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PMID: 18029230
TIRAP and TRAM are required for the activation of the MyD88- and the TRIF-dependent pathways, respectively. </csml:comment>
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PMID: 18029230
TIRAP and TRAM are required for the activation of the MyD88- and the TRIF-dependent pathways, respectively. </csml:comment>
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PMID: 18029230,15064760
he TRIF C-terminal region contains the Rip homotypic interaction motif (RHIM), which is responsible for interaction with RIP1 (receptor-interacting protein-1), a member of the RIP family involved in TNF-receptor-mediated NF-&#954;B activation 29 E. Meylan et al., RIP1 is an essential mediator of Toll-like receptor 3-induced NF-kappaB activation

</csml:comment>
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PMID: 18029230,16115877
Notably, RIP1 is polyubiquitinated to form a complex with TRAF6 and TAK1, resulting in NF-&#954;B activation </csml:comment>
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PMID:18029230
These findings indicate that TRIF recruits TRAF6 and RIP1 via distinct regions and that these molecules appear to cooperative to facilitate TAK1 activation, resulting in robust NF-&#954;B activation</csml:comment>
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PMID:18029230
These findings indicate that TRIF recruits TRAF6 and RIP1 via distinct regions and that these molecules appear to cooperative to facilitate TAK1 activation, resulting in robust NF-&#954;B activation</csml:comment>
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PMID: 18029230
TLR3 uses TRIF as the sole adaptor.</csml:comment>
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</csml:comment>
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<csml:comment type="text">




PMID: 18029230
TRIF recruits TRAF3, which then interacts with TBK1 and IKKi. </csml:comment>
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PMID: 18029230
These kinases mediate phosphorylation of IRF3 (P). Phosphorylated IRF3 dimerizes and translocates into the nucleus to regulate transcription</csml:comment>
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PMID: 18029230
These kinases mediate phosphorylation of IRF3 (P). Phosphorylated IRF3 dimerizes and translocates into the nucleus to regulate transcription</csml:comment>
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PMID: 18029230
These kinases mediate phosphorylation of IRF3 (P). Phosphorylated IRF3 dimerizes and translocates into the nucleus to regulate transcription</csml:comment>
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PMID: 18029230
These kinases mediate phosphorylation of IRF3 (P). Phosphorylated IRF3 dimerizes and translocates into the nucleus to regulate transcription

PMID: 18029230,16979567
n the nucleus, IRF3 together with NF-&#954;B and ATF2/c-Jun form a multiprotein complex called an enhanceosome, which binds the promoter&#8211;enhancer region of the IFN-&#946; gene</csml:comment>
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<csml:comments>
<csml:comment type="text">



</csml:comment>
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<csml:comments>
<csml:comment type="text">




PMID: 18029230
TBK1 was identified as a protein kinase interacting with TANK (also known as I-TRAF), a TRAF-binding protein</csml:comment>
</csml:comments>
</csml:process>
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</csml:comment>
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</csml:comment>
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</csml:comment>
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<csml:comments>
<csml:comment type="text">


</csml:comment>
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<csml:comments>
<csml:comment type="text">




PMID: 18029230
TRIF recruits TRAF3, which then interacts with TBK1 and IKKi. </csml:comment>
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</csml:comment>
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</csml:comment>
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<csml:comments>
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</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">




PMID: 18029230
This allows IRF3 to form a homodimer, translocate into the nucleus and bind its target sequences, such as IFN-stimulated response element (ISRE).</csml:comment>
</csml:comments>
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</csml:comment>
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</csml:comment>
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<csml:comment type="text">



</csml:comment>
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<csml:comments>
<csml:comment type="text">




PMID: 18029230
TLR1, 2 and 6 utilize MyD88 and TIRAP as adaptors while TLR5, 7, 9 and 11 utilize MyD88. </csml:comment>
</csml:comments>
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</csml:comment>
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</csml:comment>
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</csml:comment>
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PMID: 18029230
In pDCs, IRF7 forms a signaling complex with MyD88, IRAK4, TRAF6, IRAK1 and IKKalpha

PMID: 18029230
IRAK1, but not IRAK4, physically interacts with IRF7

PMID: 18029230
TRAF3 binds to a MyD88&#8211;IRAK1&#8211;IRF7 complex and pDCs derived from TRAF3-deficient mice have defects in IFN-greek small letter alpha production</csml:comment>
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PMID: 18029230
In response to ligand stimulation, IRF7 is phosphorylated by IRAK1 and IKKalpha</csml:comment>
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PMID: 18029230
n response to ligand stimulation, IRF7 is phosphorylated by IRAK1 and IKKgreek small letter alpha, dimerizes and is then translocated into the nucleus.</csml:comment>
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PMID: 18029230
n response to ligand stimulation, IRF7 is phosphorylated by IRAK1 and IKKgreek small letter alpha, dimerizes and is then translocated into the nucleus.</csml:comment>
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PMID: 18029230
IRF7 regulates the expression of type I IFNs, including IFN-greek small letter alpha and IFN-&#946;</csml:comment>
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PMID: 18029230
IRF7 regulates the expression of type I IFNs, including IFN-greek small letter alpha and IFN-&#946;</csml:comment>
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PMID: 18029230
TLR1, 2 and 6 utilize MyD88 and TIRAP as adaptors</csml:comment>
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PMID: 18029230
TLR1, 2 and 6 utilize MyD88 and TIRAP as adaptors</csml:comment>
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</csml:comment>
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PMID: 18029230
MyD88 recruits TRAF6 and members of the IRAK family

PMID: 18029230,15229469
Upon TLR activation, through its death domain, MyD88 interacts with the death domains of members of the IRAK (IL-1 receptor-associated kinase) family of protein kinases, including IRAK1, IRAK2, IRAK4 and IRAK-M,
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PMID: 18029230
IRAK4 is initially activated, which in turn phosphorylates and activates IRAK1. </csml:comment>
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PMID: 18029230
MyD88 recruits TRAF6 and members of the IRAK family

PMID: 18029230,15229469
Upon TLR activation, through its death domain, MyD88 interacts with the death domains of members of the IRAK (IL-1 receptor-associated kinase) family of protein kinases, including IRAK1, IRAK2, IRAK4 and IRAK-M,
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PMID: 18029230
IRAK4 is initially activated, which in turn phosphorylates and activates IRAK1. </csml:comment>
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PMID: 18029230
After IRAK4 and IRAK1 have been sequentially phosphorylated, they dissociate from MyD88 and interact with TRAF6. </csml:comment>
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PMID: 18029230
After IRAK4 and IRAK1 have been sequentially phosphorylated, they dissociate from MyD88 and interact with TRAF6. </csml:comment>
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PMID: 18029230,17496917,16858426
TRAF6 is a RING-domain E3 ubiquitin ligase, and together with E2, Ubc13 and Uev1A, it promotes Lys63-linked polyubiquitination of target proteins, including TRAF6 itself and NEMO</csml:comment>
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PMID: 18029230
MyD88 recruits TRAF6 and members of the IRAK family

PMID: 18029230,15229469
Upon TLR activation, through its death domain, MyD88 interacts with the death domains of members of the IRAK (IL-1 receptor-associated kinase) family of protein kinases, including IRAK1, IRAK2, IRAK4 and IRAK-M,
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PMID: 18029230
IRAK4 is initially activated, which in turn phosphorylates and activates IRAK1. </csml:comment>
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PMID: 18029230
MyD88 recruits TRAF6 and members of the IRAK family

PMID: 18029230,15229469
Upon TLR activation, through its death domain, MyD88 interacts with the death domains of members of the IRAK (IL-1 receptor-associated kinase) family of protein kinases, including IRAK1, IRAK2, IRAK4 and IRAK-M,
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PMID: 18029230
IRAK4 is initially activated, which in turn phosphorylates and activates IRAK1. </csml:comment>
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PMID: 18029230
After IRAK4 and IRAK1 have been sequentially phosphorylated, they dissociate from MyD88 and interact with TRAF6. </csml:comment>
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</csml:comment>
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<csml:comment type="text">




PMID: 18029230
Pretreatment of MyD88-deficient cells with cyclohexamide, a protein synthesis inhibitor, results in an abrogation of LPS-induced NF-&#954;B activation, thus suggesting that late phase NF-&#954;B activation is likely to require protein synthesis.

PMID: 18029230
LPS induces TNF-greek small letter alpha synthesis via a MyD88-independent mechanism, and the newly synthesized TNF-greek small letter alpha subsequently binds TNF receptor to initiate the late phase NF-&#954;B activation in an autocrine manner, at least in MEF cells.</csml:comment>
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indirect</csml:comment>
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PMID: 18029230
LPS induces TNF-greek small letter alpha synthesis via a MyD88-independent mechanism, and the newly synthesized TNF-greek small letter alpha subsequently binds TNF receptor to initiate the late phase NF-&#954;B activation in an autocrine manner, at least in MEF cells.</csml:comment>
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PMID: 18029230
LPS induces TNF-greek small letter alpha synthesis via a MyD88-independent mechanism, and the newly synthesized TNF-greek small letter alpha subsequently binds TNF receptor to initiate the late phase NF-&#954;B activation in an autocrine manner, at least in MEF cells.</csml:comment>
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PMID: 18029230
RIG-I and Mda5 contain CARD-like structures that mediate interaction with the adaptor IPS-1</csml:comment>
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PMID: 18029230
RIG-I and Mda5 contain CARD-like structures that mediate interaction with the adaptor IPS-1</csml:comment>
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PMID: 18029230
IPS-1 interacts with TRAF3, which subsequently activates the TBK1/IKKi&#8211;IRF3/7 axis

PMID: 18029230,16585540
In parallel, IPS-1 interacts with FADD and caspase-8/-10, causing NF-&#954;B activation

PMID: 18029230,17468758 
NEMO is shown to participate in both NF-&#954;B and IRF3 activation in RIG-I and Mda5 signaling pathways
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PMID: 18029230
Cells express cytoplasmic RNA helicases (RIG-I and Mda5) that recognize RNA derived from actively replicating RNA viruses. </csml:comment>
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PMID: 18029230
Cells express cytoplasmic RNA helicases (RIG-I and Mda5) that recognize RNA derived from actively replicating RNA viruses. </csml:comment>
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</csml:comment>
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<csml:comment type="text">



PMID: 18029230
IPS-1 interacts with TRAF3, which subsequently activates the TBK1/IKKi&#8211;IRF3/7 axis

PMID: 18029230,16585540
In parallel, IPS-1 interacts with FADD and caspase-8/-10, causing NF-&#954;B activation

PMID: 18029230,17468758 
NEMO is shown to participate in both NF-&#954;B and IRF3 activation in RIG-I and Mda5 signaling pathways
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indirect</csml:comment>
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PMID:18029230
IPS-1 interacts with TRAF3, which subsequently activates the TBK1/IKKi&#8211;IRF3/7 axis</csml:comment>
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indirect</csml:comment>
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PMID:18029230
IPS-1 interacts with TRAF3, which subsequently activates the TBK1/IKKi&#8211;IRF3/7 axis</csml:comment>
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PMID: 18029230,16585540
In parallel, IPS-1 interacts with FADD and caspase-8/-10, causing NF-&#954;B activation</csml:comment>
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PMID: 18029230,16585540
In parallel, IPS-1 interacts with FADD and caspase-8/-10, causing NF-&#954;B activation</csml:comment>
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PMID: 18029230
IKKi can phosphorylate a serine residue in STAT1 that is crucial for the transcriptional activity</csml:comment>
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</csml:comment>
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PMID: 18029230,17618271
Recently, DAI (DNA-dependent activator of interferon-regulatory factors, also known as DLM-1 and ZBP1) has been identified as a cytosolic sensor for dsDN

PMID: 18029230
DAI is an IFN-inducible gene that has dsDNA-binding properties</csml:comment>
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</csml:comment>
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PMID: 18029230
Whereas DAI activates IRF3 via direct interactions with TBK1 and IRF3, pathways for NF-&#954;B activation remain unknown.</csml:comment>
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</csml:comment>
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PMID: 18029230
Whereas DAI activates IRF3 via direct interactions with TBK1 and IRF3, pathways for NF-&#954;B activation remain unknown.</csml:comment>
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indirect</csml:comment>
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</csml:comment>
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PMID:18029230
IPS-1 interacts with TRAF3, which subsequently activates the TBK1/IKKi&#8211;IRF3/7 axis</csml:comment>
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PMID:18029230
IPS-1 interacts with TRAF3, which subsequently activates the TBK1/IKKi&#8211;IRF3/7 

PMID: 18029230,12702806 
TBK1 and IKKi can also phosphorylate and activate IRF7, which is the member of IRF family most closely related to IRF3
</csml:comment>
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PMID: 18029230
IPS-1 interacts with TRAF3, which subsequently activates the TBK1/IKKi&#8211;IRF3/7 axis</csml:comment>
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indirect</csml:comment>
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PMID: 18029230
Ubiquitin-dependent proteolytic degradation of the C-terminal region of p105 and p100 results in the generation of mature p50 and p52</csml:comment>
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PMID: 18029230
Ubiquitin-dependent proteolytic degradation of the C-terminal region of p105 and p100 results in the generation of mature p50 and p52</csml:comment>
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PMID: 18029230
Importantly, p100 phosphorylation is mediated by the IKKgreek small letter alpha&#8211;IKKgreek small letter alpha homodimer, which does not require IKKbeta and NEMO. </csml:comment>
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indirect</csml:comment>
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<csml:comment type="text">



PMID: 18029230
p52 then forms a heterodimer with RelB to regulate expression of target genes.</csml:comment>
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indirect</csml:comment>
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<csml:comment type="text">



PMID: 18029230
p52 then forms a heterodimer with RelB to regulate expression of target genes.</csml:comment>
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</csml:comment>
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PMID: 18029230,11460167
It has been suggested that TAK1 can phosphorylate IKK&#946; and increase its enzymatic activity </csml:comment>
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PMID: 18029230,17496917
Ubiquitinated NEMO and TRAF6 subsequently recruit a protein kinase complex involving TAK1 (transforming growth factor-&#946;-activated kinase-1) and TABs (TAK1 binding proteins) (TAB1, TAB2 and TAB3), Ubiquitin-mediated activation of TAK1 and IKK, which then activates two distinct pathways involving the IKK complex and the mitogen-activated protein kinase (MAPK) (ERK, JNK, p38) pathway </csml:comment>
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PMID: 18029230,17496917
Ubiquitinated NEMO and TRAF6 subsequently recruit a protein kinase complex involving TAK1 (transforming growth factor-&#946;-activated kinase-1) and TABs (TAK1 binding proteins) (TAB1, TAB2 and TAB3), Ubiquitin-mediated activation of TAK1 and IKK, which then activates two distinct pathways involving the IKK complex and the mitogen-activated protein kinase (MAPK) (ERK, JNK, p38) pathway </csml:comment>
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indirect</csml:comment>
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PMID: 18029230,17496917
Ubiquitinated NEMO and TRAF6 subsequently recruit a protein kinase complex involving TAK1 (transforming growth factor-&#946;-activated kinase-1) and TABs (TAK1 binding proteins) (TAB1, TAB2 and TAB3), Ubiquitin-mediated activation of TAK1 and IKK, which then activates two distinct pathways involving the IKK complex and the mitogen-activated protein kinase (MAPK) (ERK, JNK, p38) pathway </csml:comment>
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indirect</csml:comment>
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PMID: 18029230,17496917
Ubiquitinated NEMO and TRAF6 subsequently recruit a protein kinase complex involving TAK1 (transforming growth factor-&#946;-activated kinase-1) and TABs (TAK1 binding proteins) (TAB1, TAB2 and TAB3), Ubiquitin-mediated activation of TAK1 and IKK, which then activates two distinct pathways involving the IKK complex and the mitogen-activated protein kinase (MAPK) (ERK, JNK, p38) pathway </csml:comment>
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PMID: 18029230,16115877
Notably, RIP1 is polyubiquitinated to form a complex with TRAF6 and TAK1, resulting in NF-&#954;B activation</csml:comment>
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indirect</csml:comment>
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PMID: 18029230,16115877
Notably, RIP1 is polyubiquitinated to form a complex with TRAF6 and TAK1, resulting in NF-&#954;B activation</csml:comment>
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PMID: 18029230
t has been shown that NAK enhances the enzymatic activity of IKK&#946; through direct phosphorylation, contributing to NF-&#954;B activation.</csml:comment>
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PMID: 18029230,15064760
he TRIF C-terminal region contains the Rip homotypic interaction motif (RHIM), which is responsible for interaction with RIP1 (receptor-interacting protein-1), a member of the RIP family involved in TNF-receptor-mediated NF-&#954;B activation 29 E. Meylan et al., RIP1 is an essential mediator of Toll-like receptor 3-induced NF-kappaB activation

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