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PMID: 17667934,12697090
Following the discovery of TLR4, TLR2 was found to be the
receptor for components of the Gram-positive bacterial cell wall,
recognizing triacyl lipopeptides in combination with TLR1, and diacyl lipopeptides in combination with TLR6.</csml:comment>
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PMID: 17667934,12697090
Following the discovery of TLR4, TLR2 was found to be the
receptor for components of the Gram-positive bacterial cell wall,
recognizing triacyl lipopeptides in combination with TLR1, and diacyl lipopeptides in combination with TLR6.</csml:comment>
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</csml:comment>
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PMID: 17667934,11607032
TLR3 recognises doublestranded
RNA</csml:comment>
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<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
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PMID: 17667934,17283206,11323673,11489966
TLR5 recognises bacterial flagellin</csml:comment>
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</csml:comment>
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<csml:comment type="text">








PMID: 17667934,14976262,11812998,11130078
TLR7/8
recognise single-stranded viral RNA, and TLR-9 recognises unmethylated
CpG DNA motifs present in both viruses and bacteria</csml:comment>
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<csml:comment type="text">








PMID: 17667934,14976262,11812998,11130078
TLR7/8
recognise single-stranded viral RNA, and TLR-9 recognises unmethylated
CpG DNA motifs present in both viruses and bacteria</csml:comment>
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PMID: 17667934,14976262,11812998,11130078
TLR7/8
recognise single-stranded viral RNA, and TLR-9 recognises unmethylated
CpG DNA motifs present in both viruses and bacteria</csml:comment>
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</csml:comment>
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<csml:comments>
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</csml:comment>
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<csml:comments>
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PMID: 17667934,11057907
TLR3 signals via the MyD88-independent pathway using the alternate
adaptor protein TRIF</csml:comment>
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<csml:comments>
<csml:comment type="text">








PMID: 17667934,16497588
TRIF interacts with
tumour necrosis factor (TNF) receptor associated factor 3 (TRAF3)
3 to activate TRAF-family-member-associated NFkB activator
(TANK)-binding kinase 1 (TBK1), and the non-canonical inhibitor
of NFkB (IkappaB) kinase , IKKi</csml:comment>
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<csml:comments>
<csml:comment type="text">








indirect</csml:comment>
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<csml:comment type="text">







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<csml:comments>
<csml:comment type="text">








PMID: 17667934,16497588
TRIF interacts with
tumour necrosis factor (TNF) receptor associated factor 3 (TRAF3)
3 to activate TRAF-family-member-associated NFkB activator
(TANK)-binding kinase 1 (TBK1), and the non-canonical inhibitor
of NFkB (IkB) kinase , IKKi
</csml:comment>
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<csml:comment type="text">








indirect</csml:comment>
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<csml:comment type="text">







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PMID: 17667934
These kinases directly phosphorylate
interferon regulatory factor-3 (IRF-3).

PMID: 17667934,17190786 
TBK1/IKKi phosphorylate IRF-3 and IRF-7,
inducing a type-1 IFN response.

PMID: 17667934,15841462
Otsuka et al showed that NS3 binds TBK1 to act as a
competitive inhibitor of the TBK1-IRF-3 interaction, to reduce IRF-3
activation and therefore downstream IFNb induction</csml:comment>
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PMID: 17667934
Phosphorylated IRF-3 forms a
dimer before translocating to the nucleus, where it induces expression
of IFNb.</csml:comment>
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indirect</csml:comment>
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<csml:comments>
<csml:comment type="text">



PMID: 17667934,15665823
TRIF is also able to interact with receptor-interacting protein
1 and TRAF6 to induce a late phase proinflammatory cytokine
response</csml:comment>
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<csml:comment type="text">


</csml:comment>
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PMID: 17667934,15665823
TRIF is also able to interact with receptor-interacting protein
1 and TRAF6 to induce a late phase proinflammatory cytokine
response</csml:comment>
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PMID: 17667934,16497588 
TLR4 uses the
adaptor TRAM to recruit TRIF and induce a type-1 IFN response via
the MyD88-independent pathway described above

PMID: 17667934
Figure2 </csml:comment>
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PMID: 17667934,16497588 
TLR4 uses the
adaptor TRAM to recruit TRIF and induce a type-1 IFN response via
the MyD88-independent pathway described above

PMID: 17667934
Figure2 </csml:comment>
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PMID: 17667934,12447441
In
contrast, TLR4 uses the coadaptor Mal to recruit MyD88 to its TIR
domain</csml:comment>
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PMID: 17667934,12447441
In
contrast, TLR4 uses the coadaptor Mal to recruit MyD88 to its TIR
domain</csml:comment>
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indirect</csml:comment>
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PMID: 17667934,17457343,15928677
Stimulation of the MyD88-dependent pathway initiates a
downstream signalling cascade involving sequential activation of
primary and secondary kinases including the interleukin-1 receptor
(IL-1R) associated kinases -4 and -1 (IRAK-4, and -1), TRAF6 and
TGF-b-activated kinase (TAK1).

PMID: 17667934
Figure2


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indirect</csml:comment>
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<csml:comment type="text">



PMID: 17667934,17457343,15928677
Stimulation of the MyD88-dependent pathway initiates a
downstream signalling cascade involving sequential activation of
primary and secondary kinases including the interleukin-1 receptor
(IL-1R) associated kinases -4 and -1 (IRAK-4, and -1), TRAF6 and
TGF-b-activated kinase (TAK1).

PMID: 17667934
Figure2

</csml:comment>
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indirect</csml:comment>
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<csml:comment type="text">



PMID: 17667934,17457343,15928677
Stimulation of the MyD88-dependent pathway initiates a
downstream signalling cascade involving sequential activation of
primary and secondary kinases including the interleukin-1 receptor
(IL-1R) associated kinases -4 and -1 (IRAK-4, and -1), TRAF6 and
TGF-b-activated kinase (TAK1).

PMID: 17667934
Figure2

</csml:comment>
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indirect</csml:comment>
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PMID: 17667934,17457343,15928677
Stimulation of the MyD88-dependent pathway initiates a
downstream signalling cascade involving sequential activation of
primary and secondary kinases including the interleukin-1 receptor
(IL-1R) associated kinases -4 and -1 (IRAK-4, and -1), TRAF6 and
TGF-b-activated kinase (TAK1).

PMID: 17667934
Figure2

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inidirect</csml:comment>
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PMID: 17667934,15208624
Activated TAK1, in a complex with the TAK-1
binding proteins, TAB1 and TAB2, phosphorylates the IKK complex
and the MAP kinases (JNK, ERK and p38), leading to activation of
transcription factors nuclear factor-kappa B (NF-KappaB), and/or activating
protein-1 (AP-1), respectively.
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indirect</csml:comment>
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PMID: 17667934,15208624
Activated TAK1, in a complex with the TAK-1
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and the MAP kinases (JNK, ERK and p38), leading to activation of
transcription factors nuclear factor-kappa B (NF-KappaB), and/or activating
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indirect</csml:comment>
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PMID: 17667934,15208624
Activated TAK1, in a complex with the TAK-1
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PMID: 17667934,15208624
Activated TAK1, in a complex with the TAK-1
binding proteins, TAB1 and TAB2, phosphorylates the IKK complex
and the MAP kinases (JNK, ERK and p38), leading to activation of
transcription factors nuclear factor-kappa B (NF-KappaB), and/or activating
protein-1 (AP-1), respectively.
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PMID: 17667934,15208624
Activated TAK1, in a complex with the TAK-1
binding proteins, TAB1 and TAB2, phosphorylates the IKK complex
and the MAP kinases (JNK, ERK and p38), leading to activation of
transcription factors nuclear factor-kappa B (NF-KappaB), and/or activating
protein-1 (AP-1), respectively.

PMID: 17667934,12566418
A52R inhibits NF-kB induction by multiple
TLRs via interaction with IRAK2 and TRAF6</csml:comment>
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indirect</csml:comment>
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PMID: 17667934,15208624
Activated TAK1, in a complex with the TAK-1
binding proteins, TAB1 and TAB2, phosphorylates the IKK complex
and the MAP kinases (JNK, ERK and p38), leading to activation of
transcription factors nuclear factor-kappa B (NF-KappaB), and/or activating
protein-1 (AP-1), respectively.</csml:comment>
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PMID: 17667934,15208624
Activated TAK1, in a complex with the TAK-1
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and the MAP kinases (JNK, ERK and p38), leading to activation of
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protein-1 (AP-1), respectively.</csml:comment>
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PMID: 17667934,15208624
Activated TAK1, in a complex with the TAK-1
binding proteins, TAB1 and TAB2, phosphorylates the IKK complex
and the MAP kinases (JNK, ERK and p38), leading to activation of
transcription factors nuclear factor-kappa B (NF-KappaB), and/or activating
protein-1 (AP-1), respectively.</csml:comment>
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PMID: 17667934,16497588
In contrast, TLR7/8 and TLR9 are able to use MyD88 to induce
expression of both proinflammatory cytokines and type-1 IFN</csml:comment>
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PMID: 17667934,16306936,16306937,16604075,15800576,15361868,16612387,16125763
Following nucleic acid recognition,MyD88 forms a signalling complex
with IRAK-1, IRAK-4, TRAF6, TRAF3, IKKa and a precursor of
osteopontin (OPN)</csml:comment>
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PMID: 17667934
The MyD88- IRAK-4-
TRAF6 complex activates NF-KappaB and AP-1 as described above.</csml:comment>
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PMID: 17667934
The MyD88- IRAK-4-
TRAF6 complex activates NF-KappaB and AP-1 as described above.</csml:comment>
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indirect</csml:comment>
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PMID: 17667934
In
addition, the recruitment of IRAK-1, TRAF-3, IKKa and OPN allows
TLR7/8 and TLR9 to activate IRF-7, which translocates to the nucleus
to regulate the expression of type-1 IFN genes, especially IFNa</csml:comment>
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PMID: 17667934
In
addition, the recruitment of IRAK-1, TRAF-3, IKKa and OPN allows
TLR7/8 and TLR9 to activate IRF-7, which translocates to the nucleus
to regulate the expression of type-1 IFN genes, especially IFNa</csml:comment>
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indirect</csml:comment>
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PMID: 17667934
In
addition, the recruitment of IRAK-1, TRAF-3, IKKa and OPN allows
TLR7/8 and TLR9 to activate IRF-7, which translocates to the nucleus
to regulate the expression of type-1 IFN genes, especially IFNa</csml:comment>
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<csml:comment type="text">


PMID: 17667934,15208624
It
was recognized that TLR-independent mechanisms existed to detect
intracellular viral infection, and in 2004 Yoneyama and colleagues identified RIG-I as a cytosolic sensor of dsRNA produced during
viral replication, triggering a type-1 interferon and proinflammatory cytokine response</csml:comment>
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<csml:comment type="text">


PMID: 17667934
MDA-5 was identified soon after as a second
CARD-containing helicase

PMID: 17667934
Figure 2
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PMID: 17667934
Following dsRNA binding, RIG-I undergoes a conformational shift
allowing self-association and CARD interaction with a downstream
adaptor protein, IFN-b promoter stimulator (IPS-1).</csml:comment>
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PMID: 17667934
Following dsRNA binding, RIG-I undergoes a conformational shift
allowing self-association and CARD interaction with a downstream
adaptor protein, IFN-b promoter stimulator (IPS-1).</csml:comment>
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PMID: 17667934,16127453
Like RIG-I,
MDA5 associates with IPS-1 via a CARD–CARD interaction following
dsRNA binding</csml:comment>
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PMID: 17667934,16858409
IPS-1 interacts with TRAF3 via its non-CARD region to activate
TBK-1 and IKKi</csml:comment>
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PMID: 17667934,16858409
IPS-1 interacts with TRAF3 via its non-CARD region to activate
TBK-1 and IKKi</csml:comment>
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PMID: 17667934,16858409
IPS-1 interacts with TRAF3 via its non-CARD region to activate
TBK-1 and IKKi</csml:comment>
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indirect</csml:comment>
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PMID: 17667934,16858409
IPS-1 interacts with TRAF3 via its non-CARD region to activate
TBK-1 and IKKi</csml:comment>
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indirect</csml:comment>
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PMID: 17667934,17190786 
TBK1/IKKi phosphorylate IRF-3 and IRF-7,
inducing a type-1 IFN response.</csml:comment>
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indirect</csml:comment>
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<csml:comment type="text">

PMID: 17667934,17190786 
TBK1/IKKi phosphorylate IRF-3 and IRF-7,
inducing a type-1 IFN response.</csml:comment>
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indirect</csml:comment>
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PMID: 17667934,17190786 
TBK1/IKKi phosphorylate IRF-3 and IRF-7,
inducing a type-1 IFN response.</csml:comment>
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PMID: 17667934,16127453
IPS-1
interacts with FADD, an adaptor involved in death receptor signalling
via its death domain</csml:comment>
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PMID: 17667934,16127453
IPS-1
interacts with FADD, an adaptor involved in death receptor signalling
via its death domain</csml:comment>
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PMID: 17667934,17190786
FADD forms a complex with caspase-10, and
caspase-8; the caspase cleavage products produced are specifically
involved in downstream NF-kB activation and proinflammatory
cytokine production</csml:comment>
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PMID: 17667934,17190786
FADD forms a complex with caspase-10, and
caspase-8; the caspase cleavage products produced are specifically
involved in downstream NF-kB activation and proinflammatory
cytokine production</csml:comment>
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PMID: 17667934,11607032
Poly(I:C), a synthetic
dsRNA analogue, was first demonstrated to be a ligand for TLR3 by
Alexopoulou and colleagues in 2001, inducing type-1 interferons
and proinflammatory cytokines in a MyD88-independent manner</csml:comment>
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PMID: 17667934,11812998,12032557
TLR7 and 8 also recognize synthetic antiviral compounds,
including imidazoquinolines (imiquimod and R848) and certain
guanine nucleotide analogues (loxoribine).</csml:comment>
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PMID: 17667934,11812998,12032557
TLR7 and 8 also recognize synthetic antiviral compounds,
including imidazoquinolines (imiquimod and R848) and certain
guanine nucleotide analogues (loxoribine).</csml:comment>
</csml:comments>
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<csml:comment type="text">

PMID: 17667934,11812998,12032557
TLR7 and 8 also recognize synthetic antiviral compounds,
including imidazoquinolines (imiquimod and R848) and certain
guanine nucleotide analogues (loxoribine).</csml:comment>
</csml:comments>
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PMID: 17667934,11812998,12032557
TLR7 and 8 also recognize synthetic antiviral compounds,
including imidazoquinolines (imiquimod and R848) and certain
guanine nucleotide analogues (loxoribine).</csml:comment>
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PMID: 17667934,11812998,12032557
TLR7 and 8 also recognize synthetic antiviral compounds,
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guanine nucleotide analogues (loxoribine).</csml:comment>
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PMID: 17667934,11812998,12032557
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guanine nucleotide analogues (loxoribine).</csml:comment>
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PMID: 17667934
The F protein of RSV activates TLR4</csml:comment>
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PMID: 17667934,17082626,14739339,12163593,15521019,12663765,16973959,17082589
TLR2 has been shown to be activated by a number of viruses or
viral proteins, including the haemaglutinin protein (HA) of measles
virus (MV), HSV-1, the core and NS3 proteins of hepatitis C virus
(HCV), the envelope glycoproteins B and H of human CMV and vaccinia virus (VV).</csml:comment>
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PMID: 17667934,17082626,14739339,12163593,15521019,12663765,16973959,17082589
TLR2 has been shown to be activated by a number of viruses or
viral proteins, including the haemaglutinin protein (HA) of measles
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(HCV), the envelope glycoproteins B and H of human CMV and vaccinia virus (VV).</csml:comment>
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PMID: 17667934,17082626,14739339,12163593,15521019,12663765,16973959,17082589
TLR2 has been shown to be activated by a number of viruses or
viral proteins, including the haemaglutinin protein (HA) of measles
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(HCV), the envelope glycoproteins B and H of human CMV and vaccinia virus (VV).</csml:comment>
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PMID: 17667934,17082626,14739339,12163593,15521019,12663765,16973959,17082589
TLR2 has been shown to be activated by a number of viruses or
viral proteins, including the haemaglutinin protein (HA) of measles
virus (MV), HSV-1, the core and NS3 proteins of hepatitis C virus
(HCV), the envelope glycoproteins B and H of human CMV and vaccinia virus (VV).</csml:comment>
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<csml:comment type="text">

PMID: 17667934,17082626,14739339,12163593,15521019,12663765,16973959,17082589
TLR2 has been shown to be activated by a number of viruses or
viral proteins, including the haemaglutinin protein (HA) of measles
virus (MV), HSV-1, the core and NS3 proteins of hepatitis C virus
(HCV), the envelope glycoproteins B and H of human CMV and vaccinia virus (VV).</csml:comment>
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PMID: 17667934,17082626,14739339,12163593,15521019,12663765,16973959,17082589
TLR2 has been shown to be activated by a number of viruses or
viral proteins, including the haemaglutinin protein (HA) of measles
virus (MV), HSV-1, the core and NS3 proteins of hepatitis C virus
(HCV), the envelope glycoproteins B and H of human CMV and vaccinia virus (VV).</csml:comment>
</csml:comments>
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</csml:comment>
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<csml:comment type="text">

PMID: 17667934
When patient PBMCs were stimulated with the specific TLR2
ligand Pam-3-Cys, relative suppression of TNFa induction was noted
in the HBeAg-positive group, confirming functional significance.</csml:comment>
</csml:comments>
</csml:process>
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<csml:comments>
<csml:comment type="text">

PMID: 17667934
When patient PBMCs were stimulated with the specific TLR2
ligand Pam-3-Cys, relative suppression of TNFa induction was noted
in the HBeAg-positive group, confirming functional significance.</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
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<csml:comment type="text"></csml:comment>
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</csml:connectorSimulationProperty>
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<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
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<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
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</csml:connectorKinetic>
</csml:connectorSimulationProperty>
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<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
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<csml:priority value="0"/>
<csml:firing firingOnce="false" firingStyle="csml-firingStyle:and" type="csml-variable:Boolean" value="true"/>
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<csml:processKinetic calcStyle="csml-calcStyle:speed" fast="false" kineticStyle="csml-kineticStyle:mass">
<csml:parameter key="coefficient2" value="1.0"/>
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</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
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<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytoplasm"/>
<csml:comments>
<csml:comment type="text">
PMID: 17667934,17190786
FADD forms a complex with caspase-10, and
caspase-8; the caspase cleavage products produced are specifically
involved in downstream NF-kB activation and proinflammatory
cytokine production

PMID: 17667934,17049367,15563593
The V proteins of paramyxoviruses have been shown to interact with
MDA5, but not RIG-I, to inhibit dsRNA-induced activation of IRF3
and NF-kB</csml:comment>
</csml:comments>
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</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
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<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
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<csml:comments>
<csml:comment type="text"></csml:comment>
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</csml:connector>
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<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
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</csml:connectorSimulationProperty>
<csml:viewProperty>
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<csml:comments>
<csml:comment type="text"></csml:comment>
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PMID: 17667934,17190786
FADD forms a complex with caspase-10, and
caspase-8; the caspase cleavage products produced are specifically
involved in downstream NF-kB activation and proinflammatory
cytokine production</csml:comment>
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PMID: 17667934,17190786
FADD forms a complex with caspase-10, and
caspase-8; the caspase cleavage products produced are specifically
involved in downstream NF-kB activation and proinflammatory
cytokine production</csml:comment>
</csml:comments>
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indirect</csml:comment>
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PMID: 17667934,12163593
The proinflammatory response to
the HA protein of measles leads to the upregulation of CD150, an
entry receptor for MV, and therefore the HA-TLR2 interaction may
contribute to MV spread and pathogenesis</csml:comment>
</csml:comments>
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</csml:connector>
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PMID: 17667934,12566418
A52R inhibits NF-kB induction by multiple
TLRs via interaction with IRAK2 and TRAF6</csml:comment>
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<csml:comments>
<csml:comment type="text">
PMID: 17667934,15998638
Interestingly, the A52R-TRAF6 interaction has been shown to simultaneously activate
the MAP kinase p38 to enhance TLR-induced IL-10 induction the
immunoregulatory role of IL-10 supports that this may be another
virulence mechanism.</csml:comment>
</csml:comments>
</csml:process>
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indirect</csml:comment>
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</csml:connector>
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PMID: 17667934,15998638
Interestingly, the A52R-TRAF6 interaction has been shown to simultaneously activate
the MAP kinase p38 to enhance TLR-induced IL-10 induction the
immunoregulatory role of IL-10 supports that this may be another
virulence mechanism.</csml:comment>
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PMID: 17667934,15710891
NS3/4a was
found to inhibit the dsRNA-TLR3 response by cleaving the adaptor
TRIF between amino acids (aa) 372 and 373.</csml:comment>
</csml:comments>
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indirect</csml:comment>
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PMID: 17667934,16177806,15710891,15710892
NS3/4a also interfered
with the cytoplasmic response to dsRNA, by cleaving IPS-1 at aa Cys-
508, the downstream adaptor of RIG-I.

PMID: 17667934,16585524
The effect was able to be blocked using a specific pharmacological
inhibitor of the NS3/4a protease</csml:comment>
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PMID: 17667934,15841462
Otsuka et al showed that NS3 binds TBK1 to act as a
competitive inhibitor of the TBK1-IRF-3 interaction, to reduce IRF-3
activation and therefore downstream IFNb induction</csml:comment>
</csml:comments>
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indirect</csml:comment>
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PMID: 17667934
GBV-B encodes a
similar NS3/4a protease, which has also been shown to disrupt RIG-I
signalling by targeting IPS-1 for cleavage</csml:comment>
</csml:comments>
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PMID: 17667934,17438296
Yang et al found that the 3ABC precursor of the 3C(pro) cysteine protease of
HAV was targeted to the mitochondrial membrane where it cleaved
IPS-1, disrupting signalling activity</csml:comment>
</csml:comments>
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indirect</csml:comment>
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PMID: 17667934,17438296
Yang et al found that the 3ABC precursor of the 3C(pro) cysteine protease of
HAV was targeted to the mitochondrial membrane where it cleaved
IPS-1, disrupting signalling activity</csml:comment>
</csml:comments>
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PMID: 17667934,17049367,15563593
The V proteins of paramyxoviruses have been shown to interact with
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and NF-kB</csml:comment>
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PMID: 17667934,17049367,15563593
The V proteins of paramyxoviruses have been shown to interact with
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and NF-kB</csml:comment>
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PMID: 17667934,17079289
More recently it has been shown that NS1 also directly interacts with RIG-I to inhibit downstream activation
of IRF-3.</csml:comment>
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PMID: 17667934,17079289
More recently it has been shown that NS1 also directly interacts with RIG-I to inhibit downstream activation
of IRF-3.</csml:comment>
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<csml:comment type="text">indirect</csml:comment>
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<csml:comments>
<csml:comment type="text">PMID: 17667934
Figure2
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<csml:comments>
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Figure2
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<csml:comments>
<csml:comment type="text">PMID: 17667934
Figure2
</csml:comment>
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