<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<csml:project majorVersion="3" minorVersion="0" projectID="local" projectVersionID="undef" xmlns:csml="http://www.csml.org/csml/version3" xmlns:xlink="http://www.w3.org/1999/xlink">
<csml:model modelID="undef" modelVersionID="undef">
<csml:entitySet>
<csml:entity id="MO000007694" name="IRF-3" refUnificationXrefID="ref35;ref36;ref37;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m977" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="806.0" y="818.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.0" height="28.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_6ad24b" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#6ad24b;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_6ad24b);stroke:none;" d="M 60 48.5413 c -5.4791 -8.878 6.0417 -4.3573 -9.8171 -2.9348 l -4.5651 -27.6151 c -1.9754 -5.4859 12.2339 -9.9822 14.3816 -6.5322 c -10.571 2.2124 -2.4899 -6.8115 -5.9681 7.9727 l -29.0256 -4.4044 c -6.096 0.0919 -6.2013 -14.1503 -2.0879 -15.0274 c -1.0542 10.2454 -7.5808 0.1474 6.1282 7.8622 l -13.374 24.8929 c -1.7923 5.5423 -16.0665 1.2366 -15.6721 -2.7553 c 9.9194 4.1194 -2.1948 6.9024 9.7557 -3.1134 l 20.7599 19.7894 c 4.9886 3.3337 -3.7283 14.915 -7.5982 13.3243 c 7.1844 -7.6993 6.2238 4.1184 -0.0987 -9.7867 l 26.2042 -12.6627 c 4.875 -3.4821 13.7627 7.9809 10.9766 10.9902 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000041456" name="IRF-3{p}" refUnificationXrefID="ref38;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m19324" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1049.0" y="873.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="30.0" height="30.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_6ad24b" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#6ad24b;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_6ad24b);stroke:none;" d="M 60 48.5413 c -5.4791 -8.878 6.0417 -4.3573 -9.8171 -2.9348 l -4.5651 -27.6151 c -1.9754 -5.4859 12.2339 -9.9822 14.3816 -6.5322 c -10.571 2.2124 -2.4899 -6.8115 -5.9681 7.9727 l -29.0256 -4.4044 c -6.096 0.0919 -6.2013 -14.1503 -2.0879 -15.0274 c -1.0542 10.2454 -7.5808 0.1474 6.1282 7.8622 l -13.374 24.8929 c -1.7923 5.5423 -16.0665 1.2366 -15.6721 -2.7553 c 9.9194 4.1194 -2.1948 6.9024 9.7557 -3.1134 l 20.7599 19.7894 c 4.9886 3.3337 -3.7283 14.915 -7.5982 13.3243 c 7.1844 -7.6993 6.2238 4.1184 -0.0987 -9.7867 l 26.2042 -12.6627 c 4.875 -3.4821 13.7627 7.9809 10.9766 10.9902 z" /&gt;
&lt;defs&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" id="stroke1_0_7J]v]j1TnAamZwDU" gradientUnits="objectBoundingBox" gradientTransform="" x1="0%" y1="0%" x2="100%" y2="0%" spreadMethod="pad"&gt;&lt;stop style="stop-color:#808080;stop-opacity:1;" offset="0%"&gt;&lt;/stop&gt;&lt;/linearGradient&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" id="stroke2_0_7J]v]j1TnAamZwDU" gradientUnits="objectBoundingBox" gradientTransform="" x1="0%" y1="0%" x2="100%" y2="0%" spreadMethod="pad"&gt;&lt;stop style="stop-color:#008000;stop-opacity:1;" offset="0%"&gt;&lt;/stop&gt;&lt;/linearGradient&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" id="stroke3_0_7J]v]j1TnAamZwDU" gradientUnits="objectBoundingBox" gradientTransform="" x1="0%" y1="0%" x2="100%" y2="0%" spreadMethod="pad"&gt;&lt;stop style="stop-color:#00ff00;stop-opacity:1;" offset="0%"&gt;&lt;/stop&gt;&lt;/linearGradient&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" id="color3_0_7J]v]j1TnAamZwDU" gradientUnits="objectBoundingBox" gradientTransform="" x1="0%" y1="0%" x2="100%" y2="0%" spreadMethod="pad"&gt;&lt;stop style="stop-color:blue;stop-opacity:1;" offset="0%"&gt;&lt;/stop&gt;&lt;/linearGradient&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" id="color2_0_7J]v]j1TnAamZwDU" gradientUnits="objectBoundingBox" gradientTransform="" x1="0%" y1="0%" x2="100%" y2="0%" spreadMethod="pad"&gt;&lt;stop style="stop-color:orange;stop-opacity:1;" offset="0%"&gt;&lt;/stop&gt;&lt;/linearGradient&gt;&lt;radialGradient xmlns:xlink="http://www.w3.org/1999/xlink" id="color1_0_7J]v]j1TnAamZwDU" gradientUnits="objectBoundingBox" gradientTransform="" cx="50%" cy="50%" r="50%" fx="50%" fy="50%" spreadMethod="pad"&gt;&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"&gt;&lt;/stop&gt;&lt;stop style="stop-color:yellow;stop-opacity:1;" offset="100%"&gt;&lt;/stop&gt;&lt;/radialGradient&gt;&lt;/defs&gt;&lt;ellipse style="fill:url(#color1_0_7J]v]j1TnAamZwDU);stroke:none;" cx="11.7917" cy="12" rx="11.5078" ry="11.716"&gt;&lt;/ellipse&gt;&lt;path style="fill:url(#color2_0_7J]v]j1TnAamZwDU);stroke:none;" d="M 0 12 C 0 18.6169 5.2898 24 11.7917 24 c 6.5021 0 11.7918 -5.3831 11.7918 -12 C 23.5834 5.3832 18.2937 0 11.7917 0 C 5.2898 0 0 5.3832 0 12 z M 0.568 12 C 0.568 5.6964 5.6029 0.568 11.7917 0.568 C 17.9805 0.568 23.0154 5.6964 23.0154 12 c 0 6.3036 -5.035 11.432 -11.2238 11.432 C 5.6029 23.432 0.568 18.3036 0.568 12 z"&gt;&lt;/path&gt;&lt;path style="fill:url(#color3_0_7J]v]j1TnAamZwDU);stroke:none;" d="M 8.6611 19.6732 c 0 0.5832 -0.4166 0.8748 -0.9789 0.8748 c -0.5832 0 -0.9789 -0.2916 -0.9789 -0.8956 V 6.4471 c 0 -1.6038 0.6456 -2.2495 2.1244 -2.2495 h 4.624 c 3.291 0 5.1446 1.6871 5.1446 4.6447 c 0 3.1243 -1.9161 4.9363 -5.228 4.9363 h -4.7072 V 19.6732 z M 13.3267 12.0292 c 2.1037 0 3.2284 -1.1247 3.2284 -3.1452 c 0 -1.8746 -1.1456 -2.916 -3.2284 -2.916 h -3.9991 c -0.4582 0 -0.6665 0.2708 -0.6665 0.729 v 5.3322 H 13.3267 z"&gt;&lt;/path&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000019331" name="TBK1{active}" refUnificationXrefID="ref39;ref40;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m3902" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="999.0" y="719.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.0" height="26.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_d73c10" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#d73c10;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_d73c10);stroke:none;" d="M 59.9986 48.5407 c 0.9871 -13.4342 0.1887 -4.8076 -15.7675 -1.0439 c 3.9483 -9.4993 10.8696 -9.6801 13.1979 -13.904 l 2.57 -22.1338 c -13.1289 -5.0441 -4.7493 -1.6563 -5.9165 13.9392 c -8.279 -6.5065 -6.3213 -12.8227 -9.8259 -16.234 l -21.3394 -9.1642 c -9.1011 10.3168 -3.1239 3.7841 12.1112 9.6592 c -9.065 5.4778 -14.7763 1.7554 -19.2702 3.8711 l -15.7584 16.47 c 7.504 11.4202 2.8186 3.9949 13.4017 -7.9699 c 2.677 9.8921 -2.8109 13.9075 -2.0838 18.6265 l 11.6003 19.3432 c 13.739 -3.2587 4.8659 -1.3151 -3.8285 -14.5846 c 10.7193 0.6358 13.0389 6.8403 17.9825 7.6409 l 22.9278 -4.5152 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016608" name="IKK-i" refUnificationXrefID="ref41;ref42;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1599" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="745.0" y="869.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="29.5" height="29.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_2a93dd" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#2a93dd;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_2a93dd);stroke:none;" d="M 60 48.5407 c -0.0085 -0.7599 8.2943 -1.5313 -5.0689 -5.1523 c -0.053 -4.5216 5.4767 0.3552 -5.5543 -11.4708 l 10.6232 -20.4586 c -0.7627 -0.2272 1.0317 -7.9755 -6.7189 2.9925 c -4.538 -1.3492 2.0477 -4.8438 -13.1875 1.4793 l -17.1759 -15.9308 c -0.4628 0.6195 -7.6567 -3.3978 0.9165 7.0021 c -2.7518 3.6877 -4.2113 -3.349 -2.5957 12.3851 l -21.2386 10.6128 c 0.4766 0.6101 -5.7638 5.8755 7.2852 1.3349 c 2.8376 3.6285 -4.6503 2.7743 11.5829 6.1753 l 4.0496 22.4899 c 0.7574 -0.2425 4.0945 7.0288 3.5861 -6.1771 c 4.5053 -1.4451 1.3371 5.0633 9.7545 -8.5688 l 23.7416 3.2867 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000022224" name="dsRNA" refUnificationXrefID="ref43;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m119368" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="821.0" y="593.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="30.0" height="30.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_691efd" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#691efd;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_691efd);stroke:none;" d="M 59.9996 30.0002 l -15.4678 -3.7536 c -9.2903 0.5201 -3.0479 -6.6761 -6.9808 -6.9004 l -32.0488 -5.8791 c -8.9965 1.9659 1.5646 -6.5422 -5.5022 -13.467 l 3.9806 13.4779 c 5.1653 6.7076 -5.152 5.624 -3.4102 8.6857 l 10.1452 26.9761 c 6.4643 5.7643 -7.3247 2.0977 -10.7157 10.8604 l 11.4876 -9.7242 c 4.125 -7.2277 8.1999 1.0521 10.3905 -1.7853 l 21.9036 -21.0973 c 2.5322 -7.7302 5.76 4.4445 16.2183 2.6067 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e5" name="(IRF-3{p})2" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m5" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1054.5" y="999.4155974004332"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="27.427262122979492" height="33.58440259956673" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e6" name="(IRF-3{p})2" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m6" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="884.5" y="1209.6447258790197"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.1568071988002" height="28.35527412097984" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e11" name="(IRF-3{p})2:CBP" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m11" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="951.5" y="1282.237658285924"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.913011561754452" height="34.76234171407598" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000017462" name="CBP" refUnificationXrefID="ref44;ref45;ref46;ref47;ref48;ref49;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m2282" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="950.0" y="1166.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.0" height="28.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_bbaa6c" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#bbaa6c;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_bbaa6c);stroke:none;" d="M 60 48.5416 c 11.9549 1.6397 0.3542 -3.2304 -16.3846 -17.6213 c 11.1807 -2.263 15.817 -0.9768 2.9221 -20.2155 c 1.9632 -23.5589 24.2428 0.8191 13.4617 0.7543 c 5.3334 -10.3068 -3.1212 -1.3187 -22.6837 9.3746 c 1.192 -10.8128 3.9105 -14.609 -19.312 -8.8902 c -22.9524 -9.0557 8.3108 -21.6752 4.9141 -11.9436 c -8.6581 -8.0092 -2.2834 2.4156 2.3651 23.415 c -10.4443 -4.4195 -13.4004 -8.0516 -14.8581 14.7205 c -16.1485 17.9625 -19.1069 -14.2152 -10.4246 -8.1358 c -10.6849 5.3567 1.7097 2.8115 24.1452 5.0969 c -7.647 8.0811 -12.1925 9.6323 10.1294 17.9884 c 12.9721 20.1572 -20.1196 12.8894 -11.357 6.9151 c 2.0548 11.3195 3.3399 -0.678 12.5581 -20.2651 c 5.7186 9.4142 5.8647 14.0051 21.1178 -3.6033 c 24.1656 -5.5043 6.6722 22.1812 3.4057 12.4093 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000019984" name="p300" refUnificationXrefID="ref50;ref51;ref52;ref53;ref54;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m4512" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="787.0" y="1210.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.5" height="26.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_aed29f" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#aed29f;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_aed29f);stroke:none;" d="M 60 48.5416 c 11.9549 1.6397 0.3542 -3.2304 -16.3846 -17.6213 c 11.1807 -2.263 15.817 -0.9768 2.9221 -20.2155 c 1.9632 -23.5589 24.2428 0.8191 13.4617 0.7543 c 5.3334 -10.3068 -3.1212 -1.3187 -22.6837 9.3746 c 1.192 -10.8128 3.9105 -14.609 -19.312 -8.8902 c -22.9524 -9.0557 8.3108 -21.6752 4.9141 -11.9436 c -8.6581 -8.0092 -2.2834 2.4156 2.3651 23.415 c -10.4443 -4.4195 -13.4004 -8.0516 -14.8581 14.7205 c -16.1485 17.9625 -19.1069 -14.2152 -10.4246 -8.1358 c -10.6849 5.3567 1.7097 2.8115 24.1452 5.0969 c -7.647 8.0811 -12.1925 9.6323 10.1294 17.9884 c 12.9721 20.1572 -20.1196 12.8894 -11.357 6.9151 c 2.0548 11.3195 3.3399 -0.678 12.5581 -20.2651 c 5.7186 9.4142 5.8647 14.0051 21.1178 -3.6033 c 24.1656 -5.5043 6.6722 22.1812 3.4057 12.4093 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e12" name="(IRF-3{p})2:p300" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m12" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="811.5" y="1267.9825656083685"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.929161314002567" height="25.01743439163149" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="G010228" name="IFN-beta" refUnificationXrefID="ref55;ref56;" type="cso30:c:mRNA">
<csml:entitySimulationProperty>
<csml:variable variableID="m93217" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="904.0" y="1424.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.0" height="24.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" gradientTransform="" gradientUnits="objectBoundingBox" id="id_#ffd30f" spreadMethod="pad" x1="0%" x2="100%" y1="0%" y2="0%"&gt;&lt;stop offset="0%" style="stop-color:#ffd30f;stop-opacity:1;"/&gt;&lt;stop offset="100%" style="stop-color:#ffd30f;stop-opacity:1;"/&gt;&lt;/linearGradient&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" gradientTransform="" gradientUnits="objectBoundingBox" id="id_#28163F" spreadMethod="pad" x1="0%" x2="100%" y1="0%" y2="0%"&gt;&lt;stop offset="0%" style="stop-color:#28163F;stop-opacity:1;"/&gt;&lt;stop offset="100%" style="stop-color:#28163F;stop-opacity:1;"/&gt;&lt;/linearGradient&gt;&lt;/defs&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="0,60 5.4121,55.4096 5.7389,55.06 6.0446,54.4747 6.3308,53.669 6.5988,52.6597 6.85,51.4625 7.086,50.0951 7.3084,48.5725 7.5185,46.9122 7.7176,45.1294 7.9075,43.2418 8.0893,41.2648 8.2647,39.2155 8.4352,37.1098 8.6021,34.9635 8.7669,32.7941 8.9312,30.6181 9.0962,28.4512 9.2635,26.3088 9.4348,24.2093 9.6113,22.1683 9.7943,20.2017 9.9856,18.3261 10.1866,16.5582 10.3987,14.9142 10.6231,13.4103 10.8617,12.0629 11.1155,10.8889 11.3866,9.9046 11.6759,9.1255 11.9852,8.5686 12.3157,8.2502 12.6689,8.1875 13.026,8.3869 13.3701,8.8365 13.702,9.519 10.3627,2.6373 9.9474,1.7838 9.5171,1.2214 9.0714,0.9722 8.6295,1.0511 8.2163,1.4488 7.8298,2.1448 7.4682,3.1188 7.1295,4.3492 6.812,5.8167 6.5139,7.5009 6.2331,9.3809 5.9681,11.4358 5.717,13.646 5.4777,15.9899 5.2488,18.4483 5.0285,20.9998 4.8145,23.6243 4.6051,26.3015 4.3989,29.0108 4.1935,31.7312 3.9875,34.443 3.7788,37.1246 3.5658,39.7578 3.3465,42.319 3.1191,44.7906 2.8818,47.1504 2.633,49.3783 2.3703,51.4539 2.0924,53.3568 1.7973,55.0662 1.4832,56.5624 1.1482,57.8244 0.7907,58.8315 0.4085,59.5636" /&gt;&lt;polygon style="fill:url(#id_#ffd30f);stroke:none;" points="10.3627,2.6373 13.702,9.519 14.0227,10.4186 14.3318,11.5175 14.6304,12.7984 14.9186,14.2465 15.197,15.8431 15.4659,17.5716 15.726,19.4163 15.9776,21.3597 16.2211,23.3859 16.4571,25.4767 16.6861,27.6164 16.9084,29.7868 17.1245,31.9728 17.335,34.1571 17.5402,36.3224 17.7404,38.4523 17.9361,40.5304 18.1283,42.5388 18.3167,44.4618 18.5024,46.2823 18.6855,47.9831 18.8666,49.5479 19.0458,50.9596 19.2242,52.2015 19.4018,53.2575 19.579,54.1096 19.7564,54.7419 19.9346,55.1368 20.114,55.2787 20.3337,55.1534 20.5441,54.7661 18.9149,59.196 18.6519,59.6798 18.3775,59.8366 18.1532,59.6598 17.9304,59.1655 17.7086,58.3754 17.4871,57.3097 17.265,55.9903 17.0423,54.4377 16.818,52.6729 16.5919,50.717 16.3629,48.5909 16.1309,46.3156 15.8951,43.9118 15.6551,41.4012 15.4103,38.8036 15.1599,36.141 14.9033,33.4344 14.6407,30.7043 14.3704,27.9718 14.0925,25.258 13.8063,22.5839 13.5114,19.9701 13.2069,17.438 12.8924,15.009 12.5674,12.7032 12.2313,10.5418 11.883,8.5458 11.5229,6.7363 11.1497,5.1345 10.7633,3.7615" /&gt;&lt;polygon style="fill:url(#id_#ffd30f);stroke:none;" points="56.1668,56.8968 50.3457,52.9266 50.4902,52.9972 50.63,53.0141 50.7648,52.982 50.8965,52.9024 51.0238,52.7798 51.1481,52.6161 51.2686,52.4147 51.3872,52.1783 51.5027,51.9101 51.6164,51.6134 51.7283,51.2895 51.8385,50.9434 51.9478,50.5768 52.0561,50.1937 52.1639,49.7964 52.2717,49.3876 52.3797,48.9706 52.4881,48.5483 52.5974,48.1236 52.7074,47.7 52.8194,47.2798 52.9331,46.8666 53.049,46.4623 53.1667,46.0709 53.2883,45.6943 53.4119,45.3375 60,47.4093 59.8448,47.8561 59.6937,48.3264 59.5458,48.8158 59.4014,49.3208 59.2591,49.8379 59.1195,50.3633 58.9816,50.8925 58.845,51.4238 58.7092,51.9512 58.5744,52.4725 58.4398,52.9833 58.305,53.4804 58.1698,53.9597 58.033,54.4173 57.8951,54.8499 57.7555,55.2542 57.6133,55.6255 57.4686,55.9613 57.3209,56.2565 57.1694,56.5081 57.0146,56.713 56.8554,56.8663 56.6913,56.9653 56.5224,57.0062 56.3475,56.984" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="51.4421,42.8884 46.5659,41.7203 46.7028,41.8023 46.8376,41.9525 46.9702,42.1664 47.1013,42.4378 47.231,42.761 47.3586,43.131 47.485,43.5425 47.6101,43.9887 47.7331,44.4656 47.8552,44.9675 47.9761,45.488 48.0958,46.0228 48.2148,46.5658 48.3322,47.1106 48.4494,47.6533 48.5655,48.188 48.6806,48.7082 48.795,49.2094 48.9091,49.6863 49.0228,50.1321 49.1361,50.5433 49.2485,50.9129 49.3616,51.2355 49.5412,51.6837 49.7141,52.0613 49.8808,52.3714 50.0415,52.6172 50.1962,52.8009 50.3457,52.9266 56.1668,56.8968 55.98,56.7393 55.7863,56.5095 55.5857,56.2025 55.3774,55.8145 55.1615,55.3428 54.9367,54.7828 54.796,54.3789 54.6547,53.9171 54.5133,53.4035 54.3712,52.8463 54.2288,52.2499 54.0854,51.6235 53.9414,50.9728 53.7963,50.3052 53.6505,49.6264 53.503,48.9453 53.3548,48.2666 53.2051,47.5986 53.0539,46.9476 52.9015,46.3204 52.7472,45.7241 52.5913,45.1661 52.4332,44.6518 52.2736,44.1894 52.1118,43.7852 51.9481,43.446 51.7817,43.1788 51.6129,42.9908" /&gt;&lt;polygon style="fill:url(#id_#ffd30f);stroke:none;" points="46.5072,55.376 42.6178,51.7104 42.8505,51.8235 43.0946,51.7695 43.3515,51.5269 43.6224,51.0766 43.9089,50.3965 44.2118,49.4669 44.5328,48.2673 44.873,46.7766 45.2338,44.9751 45.3918,44.1922 45.5468,43.528 45.6996,42.976 45.85,42.5312 45.9977,42.1879 46.143,41.9407 46.2862,41.784 46.4271,41.7127 46.5659,41.7203 51.4421,42.8884 51.2686,42.8787 51.0923,42.968 50.9139,43.1639 50.7321,43.473 50.5475,43.9021 50.3595,44.4587 50.1684,45.1481 49.9745,45.9788 49.7769,46.9562 49.326,49.2087 48.9008,51.0721 48.4993,52.5718 48.1208,53.7337 47.7629,54.5837 47.4244,55.1469 47.103,55.4494 46.7979,55.5179" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="42.7693,45.6178 39.6278,43.9039 39.843,44.061 40.0506,44.359 40.2515,44.7778 40.4475,45.2963 40.6388,45.8933 40.828,46.5502 41.015,47.2449 41.2027,47.9575 41.3909,48.6667 41.5816,49.3527 41.7764,49.9943 41.9763,50.5717 42.182,51.0638 42.3954,51.4504 42.6178,51.7104 46.5072,55.376 46.2289,55.0506 45.9622,54.5678 45.7048,53.9528 45.4555,53.2308 45.2122,52.4285 44.9734,51.5712 44.7381,50.6848 44.5038,49.7943 44.2696,48.9259 44.0336,48.1049 43.7941,47.358 43.5493,46.7098 43.2981,46.1868 43.0389,45.814" /&gt;&lt;polygon style="fill:url(#id_#ffd30f);stroke:none;" points="37.2968,58.9458 35.2497,54.5661 35.4034,54.8741 35.5619,55.0825 35.7257,55.1839 35.8945,55.1721 36.0692,55.0399 36.2492,54.781 36.4354,54.3885 36.6279,53.8562 36.8266,53.1772 37.0321,52.3448 37.2442,51.3518 37.4635,50.1923 37.789,48.4808 38.0959,47.0746 38.3862,45.9539 38.6604,45.0973 38.9205,44.4843 39.1677,44.0949 39.403,43.9084 39.6278,43.9039 42.7693,45.6178 42.4887,45.6233 42.1944,45.857 41.8857,46.3439 41.5604,47.1099 41.2175,48.1807 40.8548,49.5814 40.4708,51.339 40.0643,53.4783 39.7901,54.9278 39.5249,56.1689 39.2682,57.2097 39.0199,58.059 38.7793,58.7239 38.5464,59.214 38.3212,59.5379 38.103,59.7034 37.8918,59.7179 37.6872,59.5912 37.4889,59.331" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="18.9149,59.196 20.5441,54.7661 20.7465,54.1348 20.9416,53.2765 21.1309,52.2081 21.3148,50.9479 21.4944,49.5115 21.6709,47.9184 21.845,46.1844 22.0182,44.3275 22.1908,42.3647 22.3646,40.3133 22.5398,38.1907 22.7176,36.0147 22.8994,33.8023 23.0856,31.5706 23.2776,29.3372 23.4763,27.1193 23.6825,24.9344 23.8976,22.7999 24.122,20.7326 24.3571,18.7501 24.604,16.87 24.8633,15.1097 25.136,13.4858 25.4234,12.0162 25.7263,10.7186 26.0457,9.6097 26.3825,8.7074 26.7381,8.028 27.1129,7.5891 27.5082,7.4095 27.811,7.4389 28.1009,7.5919 28.3782,7.8622 28.6434,8.2436 28.897,8.7289 29.1391,9.3117 29.3705,9.9866 29.5914,10.746 29.8025,11.5843 30.0038,12.4942 30.1959,13.4695 30.3792,14.5047 30.554,15.5915 30.7211,16.7254 30.8809,17.8987 31.0334,19.1055 31.1792,20.3387 31.3186,21.5923 31.4523,22.8601 31.5807,24.1355 31.7039,25.4116 31.8227,26.6825 31.9373,27.9413 32.0481,29.1818 32.1555,30.3977 32.26,31.5821 32.3622,32.7287 32.4623,33.8314 32.5607,34.8832 32.6577,35.878 32.7541,36.809 32.8501,37.6701 32.9535,38.5773 33.0575,39.5183 33.162,40.4857 33.2674,41.4735 33.3736,42.4744 33.4814,43.4823 33.5907,44.4902 33.7016,45.4922 33.8144,46.48 33.9295,47.4484 34.0471,48.3901 34.1672,49.2987 34.2902,50.1671 34.4164,50.9887 34.5457,51.7574 34.6785,52.4656 34.8151,53.1072 34.9556,53.6756 35.1004,54.1643 35.2497,54.5661 37.2968,58.9458 37.1103,58.4435 36.9294,57.833 36.7537,57.1225 36.583,56.3202 36.4168,55.4348 36.2552,54.474 36.0976,53.4468 35.9439,52.3617 35.7939,51.2258 35.6469,50.049 35.5031,48.8383 35.3619,47.6034 35.2232,46.3512 35.0866,45.0914 34.952,43.8312 34.819,42.58 34.6873,41.3454 34.5565,40.1361 34.4267,38.9601 34.2976,37.8262 34.1775,36.7495 34.0572,35.5855 33.9356,34.3416 33.8127,33.0267 33.6876,31.6489 33.5602,30.2153 33.4294,28.735 33.295,27.2152 33.1565,25.665 33.0132,24.0912 32.8648,22.5026 32.7107,20.9077 32.5502,19.3136 32.3831,17.7291 32.2088,16.1615 32.0266,14.6203 31.836,13.1113 31.6365,11.6452 31.4275,10.2275 31.2089,8.869 30.9797,7.5753 30.7395,6.3559 30.4879,5.2186 30.2242,4.1706 29.9481,3.2212 29.6587,2.3781 29.356,1.6492 29.0392,1.0425 28.7077,0.5659 28.3609,0.2281 27.9986,0.0363 27.6202,0 27.1258,0.225 26.6575,0.7729 26.2132,1.6219 25.7921,2.7505 25.3928,4.1367 25.0141,5.7586 24.6548,7.5957 24.3139,9.6253 23.9898,11.8255 23.6812,14.1759 23.3874,16.6537 23.1069,19.2378 22.8382,21.9059 22.5802,24.6374 22.3321,27.4097 22.092,30.2018 21.8591,32.9911 21.6319,35.7565 21.4095,38.4765 21.1904,41.1298 20.9735,43.6941 20.7575,46.1473 20.5414,48.4687 20.3235,50.636 20.1028,52.6279 19.8782,54.4228 19.6482,55.9983 19.412,57.3339 19.168,58.4069" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e13" name="IRF-3" refUnificationXrefID="ref57;ref58;ref59;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m13" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="732.0" y="1236.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.0" height="24.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_6ad24b" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#6ad24b;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_6ad24b);stroke:none;" d="M 60 48.5413 c -5.4791 -8.878 6.0417 -4.3573 -9.8171 -2.9348 l -4.5651 -27.6151 c -1.9754 -5.4859 12.2339 -9.9822 14.3816 -6.5322 c -10.571 2.2124 -2.4899 -6.8115 -5.9681 7.9727 l -29.0256 -4.4044 c -6.096 0.0919 -6.2013 -14.1503 -2.0879 -15.0274 c -1.0542 10.2454 -7.5808 0.1474 6.1282 7.8622 l -13.374 24.8929 c -1.7923 5.5423 -16.0665 1.2366 -15.6721 -2.7553 c 9.9194 4.1194 -2.1948 6.9024 9.7557 -3.1134 l 20.7599 19.7894 c 4.9886 3.3337 -3.7283 14.915 -7.5982 13.3243 c 7.1844 -7.6993 6.2238 4.1184 -0.0987 -9.7867 l 26.2042 -12.6627 c 4.875 -3.4821 13.7627 7.9809 10.9766 10.9902 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000007702" name="IRF-7" refUnificationXrefID="ref60;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m980" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="533.0" y="797.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="30.0" height="30.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_6aef48" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:mediumvioletred;stop-opacity:1;" offset="100%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 60 48.5413 c -5.4791 -8.878 6.0417 -4.3573 -9.8171 -2.9348 l -4.5651 -27.6151 c -1.9754 -5.4859 12.2339 -9.9822 14.3816 -6.5322 c -10.571 2.2124 -2.4899 -6.8115 -5.9681 7.9727 l -29.0256 -4.4044 c -6.096 0.0919 -6.2013 -14.1503 -2.0879 -15.0274 c -1.0542 10.2454 -7.5808 0.1474 6.1282 7.8622 l -13.374 24.8929 c -1.7923 5.5423 -16.0665 1.2366 -15.6721 -2.7553 c 9.9194 4.1194 -2.1948 6.9024 9.7557 -3.1134 l 20.7599 19.7894 c 4.9886 3.3337 -3.7283 14.915 -7.5982 13.3243 c 7.1844 -7.6993 6.2238 4.1184 -0.0987 -9.7867 l 26.2042 -12.6627 c 4.875 -3.4821 13.7627 7.9809 10.9766 10.9902 z" style="fill:url(#MO_6aef48);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000041457" name="IRF-7{p}" refUnificationXrefID="ref61;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m19325" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="593.0" y="1001.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="30.0" height="30.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;linearGradient gradientTransform="" id="stroke1_0_lI6uTUV2R7gmM2dO" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" x1="0%" y1="0%" x2="100%" y2="0%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:#808080;stop-opacity:1;"/&gt;
&lt;/linearGradient&gt;
&lt;linearGradient gradientTransform="" id="stroke2_0_lI6uTUV2R7gmM2dO" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" x1="0%" y1="0%" x2="100%" y2="0%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:#008000;stop-opacity:1;"/&gt;
&lt;/linearGradient&gt;
&lt;linearGradient gradientTransform="" id="stroke3_0_lI6uTUV2R7gmM2dO" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" x1="0%" y1="0%" x2="100%" y2="0%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:#00ff00;stop-opacity:1;"/&gt;
&lt;/linearGradient&gt;
&lt;linearGradient gradientTransform="" id="color3_0_lI6uTUV2R7gmM2dO" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" x1="0%" y1="0%" x2="100%" y2="0%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:blue;stop-opacity:1;"/&gt;
&lt;/linearGradient&gt;
&lt;linearGradient gradientTransform="" id="color2_0_lI6uTUV2R7gmM2dO" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" x1="0%" y1="0%" x2="100%" y2="0%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:orange;stop-opacity:1;"/&gt;
&lt;/linearGradient&gt;
&lt;radialGradient gradientTransform="" id="color1_0_lI6uTUV2R7gmM2dO" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:yellow;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;radialGradient id="MO_6aef48" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:mediumvioletred;stop-opacity:1;" offset="100%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 60 48.5413 c -5.4791 -8.878 6.0417 -4.3573 -9.8171 -2.9348 l -4.5651 -27.6151 c -1.9754 -5.4859 12.2339 -9.9822 14.3816 -6.5322 c -10.571 2.2124 -2.4899 -6.8115 -5.9681 7.9727 l -29.0256 -4.4044 c -6.096 0.0919 -6.2013 -14.1503 -2.0879 -15.0274 c -1.0542 10.2454 -7.5808 0.1474 6.1282 7.8622 l -13.374 24.8929 c -1.7923 5.5423 -16.0665 1.2366 -15.6721 -2.7553 c 9.9194 4.1194 -2.1948 6.9024 9.7557 -3.1134 l 20.7599 19.7894 c 4.9886 3.3337 -3.7283 14.915 -7.5982 13.3243 c 7.1844 -7.6993 6.2238 4.1184 -0.0987 -9.7867 l 26.2042 -12.6627 c 4.875 -3.4821 13.7627 7.9809 10.9766 10.9902 z" style="fill:url(#MO_6aef48);stroke:none;"/&gt;
&lt;ellipse rx="11.5078" ry="11.716" style="fill:url(#color1_0_lI6uTUV2R7gmM2dO);stroke:none;" cx="11.7917" cy="12"/&gt;
&lt;path style="fill:url(#color2_0_lI6uTUV2R7gmM2dO);stroke:none;" d="M 0 12 C 0 18.6169 5.2898 24 11.7917 24 c 6.5021 0 11.7918 -5.3831 11.7918 -12 C 23.5834 5.3832 18.2937 0 11.7917 0 C 5.2898 0 0 5.3832 0 12 z M 0.568 12 C 0.568 5.6964 5.6029 0.568 11.7917 0.568 C 17.9805 0.568 23.0154 5.6964 23.0154 12 c 0 6.3036 -5.035 11.432 -11.2238 11.432 C 5.6029 23.432 0.568 18.3036 0.568 12 z"/&gt;
&lt;path style="fill:url(#color3_0_lI6uTUV2R7gmM2dO);stroke:none;" d="M 8.6611 19.6732 c 0 0.5832 -0.4166 0.8748 -0.9789 0.8748 c -0.5832 0 -0.9789 -0.2916 -0.9789 -0.8956 V 6.4471 c 0 -1.6038 0.6456 -2.2495 2.1244 -2.2495 h 4.624 c 3.291 0 5.1446 1.6871 5.1446 4.6447 c 0 3.1243 -1.9161 4.9363 -5.228 4.9363 h -4.7072 V 19.6732 z M 13.3267 12.0292 c 2.1037 0 3.2284 -1.1247 3.2284 -3.1452 c 0 -1.8746 -1.1456 -2.916 -3.2284 -2.916 h -3.9991 c -0.4582 0 -0.6665 0.2708 -0.6665 0.729 v 5.3322 H 13.3267 z"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="G010713" name="IRF-7" refUnificationXrefID="ref62;ref63;" type="cso30:c:mRNA">
<csml:entitySimulationProperty>
<csml:variable variableID="m93631" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="624.0" y="1408.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.0" height="24.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" gradientTransform="" gradientUnits="objectBoundingBox" id="id_#8a31d9" spreadMethod="pad" x1="0%" x2="100%" y1="0%" y2="0%"&gt;&lt;stop offset="0%" style="stop-color:#8a31d9;stop-opacity:1;"/&gt;&lt;stop offset="100%" style="stop-color:#8a31d9;stop-opacity:1;"/&gt;&lt;/linearGradient&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" gradientTransform="" gradientUnits="objectBoundingBox" id="id_#28163F" spreadMethod="pad" x1="0%" x2="100%" y1="0%" y2="0%"&gt;&lt;stop offset="0%" style="stop-color:#28163F;stop-opacity:1;"/&gt;&lt;stop offset="100%" style="stop-color:#28163F;stop-opacity:1;"/&gt;&lt;/linearGradient&gt;&lt;/defs&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="0,60 5.4121,55.4096 5.7389,55.06 6.0446,54.4747 6.3308,53.669 6.5988,52.6597 6.85,51.4625 7.086,50.0951 7.3084,48.5725 7.5185,46.9122 7.7176,45.1294 7.9075,43.2418 8.0893,41.2648 8.2647,39.2155 8.4352,37.1098 8.6021,34.9635 8.7669,32.7941 8.9312,30.6181 9.0962,28.4512 9.2635,26.3088 9.4348,24.2093 9.6113,22.1683 9.7943,20.2017 9.9856,18.3261 10.1866,16.5582 10.3987,14.9142 10.6231,13.4103 10.8617,12.0629 11.1155,10.8889 11.3866,9.9046 11.6759,9.1255 11.9852,8.5686 12.3157,8.2502 12.6689,8.1875 13.026,8.3869 13.3701,8.8365 13.702,9.519 10.3627,2.6373 9.9474,1.7838 9.5171,1.2214 9.0714,0.9722 8.6295,1.0511 8.2163,1.4488 7.8298,2.1448 7.4682,3.1188 7.1295,4.3492 6.812,5.8167 6.5139,7.5009 6.2331,9.3809 5.9681,11.4358 5.717,13.646 5.4777,15.9899 5.2488,18.4483 5.0285,20.9998 4.8145,23.6243 4.6051,26.3015 4.3989,29.0108 4.1935,31.7312 3.9875,34.443 3.7788,37.1246 3.5658,39.7578 3.3465,42.319 3.1191,44.7906 2.8818,47.1504 2.633,49.3783 2.3703,51.4539 2.0924,53.3568 1.7973,55.0662 1.4832,56.5624 1.1482,57.8244 0.7907,58.8315 0.4085,59.5636" /&gt;&lt;polygon style="fill:url(#id_#8a31d9);stroke:none;" points="10.3627,2.6373 13.702,9.519 14.0227,10.4186 14.3318,11.5175 14.6304,12.7984 14.9186,14.2465 15.197,15.8431 15.4659,17.5716 15.726,19.4163 15.9776,21.3597 16.2211,23.3859 16.4571,25.4767 16.6861,27.6164 16.9084,29.7868 17.1245,31.9728 17.335,34.1571 17.5402,36.3224 17.7404,38.4523 17.9361,40.5304 18.1283,42.5388 18.3167,44.4618 18.5024,46.2823 18.6855,47.9831 18.8666,49.5479 19.0458,50.9596 19.2242,52.2015 19.4018,53.2575 19.579,54.1096 19.7564,54.7419 19.9346,55.1368 20.114,55.2787 20.3337,55.1534 20.5441,54.7661 18.9149,59.196 18.6519,59.6798 18.3775,59.8366 18.1532,59.6598 17.9304,59.1655 17.7086,58.3754 17.4871,57.3097 17.265,55.9903 17.0423,54.4377 16.818,52.6729 16.5919,50.717 16.3629,48.5909 16.1309,46.3156 15.8951,43.9118 15.6551,41.4012 15.4103,38.8036 15.1599,36.141 14.9033,33.4344 14.6407,30.7043 14.3704,27.9718 14.0925,25.258 13.8063,22.5839 13.5114,19.9701 13.2069,17.438 12.8924,15.009 12.5674,12.7032 12.2313,10.5418 11.883,8.5458 11.5229,6.7363 11.1497,5.1345 10.7633,3.7615" /&gt;&lt;polygon style="fill:url(#id_#8a31d9);stroke:none;" points="56.1668,56.8968 50.3457,52.9266 50.4902,52.9972 50.63,53.0141 50.7648,52.982 50.8965,52.9024 51.0238,52.7798 51.1481,52.6161 51.2686,52.4147 51.3872,52.1783 51.5027,51.9101 51.6164,51.6134 51.7283,51.2895 51.8385,50.9434 51.9478,50.5768 52.0561,50.1937 52.1639,49.7964 52.2717,49.3876 52.3797,48.9706 52.4881,48.5483 52.5974,48.1236 52.7074,47.7 52.8194,47.2798 52.9331,46.8666 53.049,46.4623 53.1667,46.0709 53.2883,45.6943 53.4119,45.3375 60,47.4093 59.8448,47.8561 59.6937,48.3264 59.5458,48.8158 59.4014,49.3208 59.2591,49.8379 59.1195,50.3633 58.9816,50.8925 58.845,51.4238 58.7092,51.9512 58.5744,52.4725 58.4398,52.9833 58.305,53.4804 58.1698,53.9597 58.033,54.4173 57.8951,54.8499 57.7555,55.2542 57.6133,55.6255 57.4686,55.9613 57.3209,56.2565 57.1694,56.5081 57.0146,56.713 56.8554,56.8663 56.6913,56.9653 56.5224,57.0062 56.3475,56.984" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="51.4421,42.8884 46.5659,41.7203 46.7028,41.8023 46.8376,41.9525 46.9702,42.1664 47.1013,42.4378 47.231,42.761 47.3586,43.131 47.485,43.5425 47.6101,43.9887 47.7331,44.4656 47.8552,44.9675 47.9761,45.488 48.0958,46.0228 48.2148,46.5658 48.3322,47.1106 48.4494,47.6533 48.5655,48.188 48.6806,48.7082 48.795,49.2094 48.9091,49.6863 49.0228,50.1321 49.1361,50.5433 49.2485,50.9129 49.3616,51.2355 49.5412,51.6837 49.7141,52.0613 49.8808,52.3714 50.0415,52.6172 50.1962,52.8009 50.3457,52.9266 56.1668,56.8968 55.98,56.7393 55.7863,56.5095 55.5857,56.2025 55.3774,55.8145 55.1615,55.3428 54.9367,54.7828 54.796,54.3789 54.6547,53.9171 54.5133,53.4035 54.3712,52.8463 54.2288,52.2499 54.0854,51.6235 53.9414,50.9728 53.7963,50.3052 53.6505,49.6264 53.503,48.9453 53.3548,48.2666 53.2051,47.5986 53.0539,46.9476 52.9015,46.3204 52.7472,45.7241 52.5913,45.1661 52.4332,44.6518 52.2736,44.1894 52.1118,43.7852 51.9481,43.446 51.7817,43.1788 51.6129,42.9908" /&gt;&lt;polygon style="fill:url(#id_#8a31d9);stroke:none;" points="46.5072,55.376 42.6178,51.7104 42.8505,51.8235 43.0946,51.7695 43.3515,51.5269 43.6224,51.0766 43.9089,50.3965 44.2118,49.4669 44.5328,48.2673 44.873,46.7766 45.2338,44.9751 45.3918,44.1922 45.5468,43.528 45.6996,42.976 45.85,42.5312 45.9977,42.1879 46.143,41.9407 46.2862,41.784 46.4271,41.7127 46.5659,41.7203 51.4421,42.8884 51.2686,42.8787 51.0923,42.968 50.9139,43.1639 50.7321,43.473 50.5475,43.9021 50.3595,44.4587 50.1684,45.1481 49.9745,45.9788 49.7769,46.9562 49.326,49.2087 48.9008,51.0721 48.4993,52.5718 48.1208,53.7337 47.7629,54.5837 47.4244,55.1469 47.103,55.4494 46.7979,55.5179" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="42.7693,45.6178 39.6278,43.9039 39.843,44.061 40.0506,44.359 40.2515,44.7778 40.4475,45.2963 40.6388,45.8933 40.828,46.5502 41.015,47.2449 41.2027,47.9575 41.3909,48.6667 41.5816,49.3527 41.7764,49.9943 41.9763,50.5717 42.182,51.0638 42.3954,51.4504 42.6178,51.7104 46.5072,55.376 46.2289,55.0506 45.9622,54.5678 45.7048,53.9528 45.4555,53.2308 45.2122,52.4285 44.9734,51.5712 44.7381,50.6848 44.5038,49.7943 44.2696,48.9259 44.0336,48.1049 43.7941,47.358 43.5493,46.7098 43.2981,46.1868 43.0389,45.814" /&gt;&lt;polygon style="fill:url(#id_#8a31d9);stroke:none;" points="37.2968,58.9458 35.2497,54.5661 35.4034,54.8741 35.5619,55.0825 35.7257,55.1839 35.8945,55.1721 36.0692,55.0399 36.2492,54.781 36.4354,54.3885 36.6279,53.8562 36.8266,53.1772 37.0321,52.3448 37.2442,51.3518 37.4635,50.1923 37.789,48.4808 38.0959,47.0746 38.3862,45.9539 38.6604,45.0973 38.9205,44.4843 39.1677,44.0949 39.403,43.9084 39.6278,43.9039 42.7693,45.6178 42.4887,45.6233 42.1944,45.857 41.8857,46.3439 41.5604,47.1099 41.2175,48.1807 40.8548,49.5814 40.4708,51.339 40.0643,53.4783 39.7901,54.9278 39.5249,56.1689 39.2682,57.2097 39.0199,58.059 38.7793,58.7239 38.5464,59.214 38.3212,59.5379 38.103,59.7034 37.8918,59.7179 37.6872,59.5912 37.4889,59.331" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="18.9149,59.196 20.5441,54.7661 20.7465,54.1348 20.9416,53.2765 21.1309,52.2081 21.3148,50.9479 21.4944,49.5115 21.6709,47.9184 21.845,46.1844 22.0182,44.3275 22.1908,42.3647 22.3646,40.3133 22.5398,38.1907 22.7176,36.0147 22.8994,33.8023 23.0856,31.5706 23.2776,29.3372 23.4763,27.1193 23.6825,24.9344 23.8976,22.7999 24.122,20.7326 24.3571,18.7501 24.604,16.87 24.8633,15.1097 25.136,13.4858 25.4234,12.0162 25.7263,10.7186 26.0457,9.6097 26.3825,8.7074 26.7381,8.028 27.1129,7.5891 27.5082,7.4095 27.811,7.4389 28.1009,7.5919 28.3782,7.8622 28.6434,8.2436 28.897,8.7289 29.1391,9.3117 29.3705,9.9866 29.5914,10.746 29.8025,11.5843 30.0038,12.4942 30.1959,13.4695 30.3792,14.5047 30.554,15.5915 30.7211,16.7254 30.8809,17.8987 31.0334,19.1055 31.1792,20.3387 31.3186,21.5923 31.4523,22.8601 31.5807,24.1355 31.7039,25.4116 31.8227,26.6825 31.9373,27.9413 32.0481,29.1818 32.1555,30.3977 32.26,31.5821 32.3622,32.7287 32.4623,33.8314 32.5607,34.8832 32.6577,35.878 32.7541,36.809 32.8501,37.6701 32.9535,38.5773 33.0575,39.5183 33.162,40.4857 33.2674,41.4735 33.3736,42.4744 33.4814,43.4823 33.5907,44.4902 33.7016,45.4922 33.8144,46.48 33.9295,47.4484 34.0471,48.3901 34.1672,49.2987 34.2902,50.1671 34.4164,50.9887 34.5457,51.7574 34.6785,52.4656 34.8151,53.1072 34.9556,53.6756 35.1004,54.1643 35.2497,54.5661 37.2968,58.9458 37.1103,58.4435 36.9294,57.833 36.7537,57.1225 36.583,56.3202 36.4168,55.4348 36.2552,54.474 36.0976,53.4468 35.9439,52.3617 35.7939,51.2258 35.6469,50.049 35.5031,48.8383 35.3619,47.6034 35.2232,46.3512 35.0866,45.0914 34.952,43.8312 34.819,42.58 34.6873,41.3454 34.5565,40.1361 34.4267,38.9601 34.2976,37.8262 34.1775,36.7495 34.0572,35.5855 33.9356,34.3416 33.8127,33.0267 33.6876,31.6489 33.5602,30.2153 33.4294,28.735 33.295,27.2152 33.1565,25.665 33.0132,24.0912 32.8648,22.5026 32.7107,20.9077 32.5502,19.3136 32.3831,17.7291 32.2088,16.1615 32.0266,14.6203 31.836,13.1113 31.6365,11.6452 31.4275,10.2275 31.2089,8.869 30.9797,7.5753 30.7395,6.3559 30.4879,5.2186 30.2242,4.1706 29.9481,3.2212 29.6587,2.3781 29.356,1.6492 29.0392,1.0425 28.7077,0.5659 28.3609,0.2281 27.9986,0.0363 27.6202,0 27.1258,0.225 26.6575,0.7729 26.2132,1.6219 25.7921,2.7505 25.3928,4.1367 25.0141,5.7586 24.6548,7.5957 24.3139,9.6253 23.9898,11.8255 23.6812,14.1759 23.3874,16.6537 23.1069,19.2378 22.8382,21.9059 22.5802,24.6374 22.3321,27.4097 22.092,30.2018 21.8591,32.9911 21.6319,35.7565 21.4095,38.4765 21.1904,41.1298 20.9735,43.6941 20.7575,46.1473 20.5414,48.4687 20.3235,50.636 20.1028,52.6279 19.8782,54.4228 19.6482,55.9983 19.412,57.3339 19.168,58.4069" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016882" name="LPS" refUnificationXrefID="ref64;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m155666" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="187.0" y="1123.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.0" height="26.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_547081" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#547081;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_547081);stroke:none;" d="M 60 32.3743 l -33.6576 -5.4359 c -30.9833 -3.1573 6.111 -20.3941 -26.3424 15.4502 c -17.6949 -23.4208 -17.913 -2.7301 14.7891 -37.6391 l 12.3807 33.5667 c 12.9077 29.9752 -19.7446 4.5967 25.8135 16.4189 c -10.3176 27.9274 6.7221 17.7825 -38.1951 5.2648 l 21.2769 -28.1309 c 18.0746 -26.819 13.6337 15.7984 0.528 -31.8691 c 28.0124 -4.5076 11.1899 -15.0524 23.406 32.3743 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e14" name="IFN" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m14" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="220.0" y="1213.6753975678207"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="16.17399438727783" height="37.32460243217961" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="36" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Extracellular">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e7" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m7" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="322.38939675206353" y="226.45356267870392"/>
<csml:shape shapeID="default" depth="100" visible="true">
<csml:image width="1110.610307776349" height="1573.7061187679617" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20004" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cell">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e9" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m9" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="336.9378879630627" y="282.00234730251736"/>
<csml:shape shapeID="default" depth="81" visible="true">
<csml:image width="1060.557467537048" height="1526.7038948214927" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20046" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytoplasm">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e8" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m8" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="326.35716708233605" y="254.2279549906105"/>
<csml:shape shapeID="default" depth="90" visible="true">
<csml:image width="1065.4217020272495" height="1546.992311343565" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cell_WithoutCellWall_">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e10" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m10" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="361.4216264217912" y="330.969824219975"/>
<csml:shape shapeID="default" depth="72" visible="true">
<csml:image width="1052.8794707416862" height="1481.1053618723727" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20045" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e15" name="IFN-alpha1" type="cso30:c:mRNA">
<csml:entitySimulationProperty>
<csml:variable variableID="m15" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="979.0" y="1446.0380622837372"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="50.55363321799308" height="26.961937716262977" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="37" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="G010522" name="RANTES" refUnificationXrefID="ref65;ref66;" type="cso30:c:mRNA">
<csml:entitySimulationProperty>
<csml:variable variableID="m93487" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1038.0" y="1206.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.0" height="28.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" gradientTransform="" gradientUnits="objectBoundingBox" id="id_#d28e80" spreadMethod="pad" x1="0%" x2="100%" y1="0%" y2="0%"&gt;&lt;stop offset="0%" style="stop-color:#d28e80;stop-opacity:1;"/&gt;&lt;stop offset="100%" style="stop-color:#d28e80;stop-opacity:1;"/&gt;&lt;/linearGradient&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" gradientTransform="" gradientUnits="objectBoundingBox" id="id_#28163F" spreadMethod="pad" x1="0%" x2="100%" y1="0%" y2="0%"&gt;&lt;stop offset="0%" style="stop-color:#28163F;stop-opacity:1;"/&gt;&lt;stop offset="100%" style="stop-color:#28163F;stop-opacity:1;"/&gt;&lt;/linearGradient&gt;&lt;/defs&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="0,60 5.4121,55.4096 5.7389,55.06 6.0446,54.4747 6.3308,53.669 6.5988,52.6597 6.85,51.4625 7.086,50.0951 7.3084,48.5725 7.5185,46.9122 7.7176,45.1294 7.9075,43.2418 8.0893,41.2648 8.2647,39.2155 8.4352,37.1098 8.6021,34.9635 8.7669,32.7941 8.9312,30.6181 9.0962,28.4512 9.2635,26.3088 9.4348,24.2093 9.6113,22.1683 9.7943,20.2017 9.9856,18.3261 10.1866,16.5582 10.3987,14.9142 10.6231,13.4103 10.8617,12.0629 11.1155,10.8889 11.3866,9.9046 11.6759,9.1255 11.9852,8.5686 12.3157,8.2502 12.6689,8.1875 13.026,8.3869 13.3701,8.8365 13.702,9.519 10.3627,2.6373 9.9474,1.7838 9.5171,1.2214 9.0714,0.9722 8.6295,1.0511 8.2163,1.4488 7.8298,2.1448 7.4682,3.1188 7.1295,4.3492 6.812,5.8167 6.5139,7.5009 6.2331,9.3809 5.9681,11.4358 5.717,13.646 5.4777,15.9899 5.2488,18.4483 5.0285,20.9998 4.8145,23.6243 4.6051,26.3015 4.3989,29.0108 4.1935,31.7312 3.9875,34.443 3.7788,37.1246 3.5658,39.7578 3.3465,42.319 3.1191,44.7906 2.8818,47.1504 2.633,49.3783 2.3703,51.4539 2.0924,53.3568 1.7973,55.0662 1.4832,56.5624 1.1482,57.8244 0.7907,58.8315 0.4085,59.5636" /&gt;&lt;polygon style="fill:url(#id_#d28e80);stroke:none;" points="10.3627,2.6373 13.702,9.519 14.0227,10.4186 14.3318,11.5175 14.6304,12.7984 14.9186,14.2465 15.197,15.8431 15.4659,17.5716 15.726,19.4163 15.9776,21.3597 16.2211,23.3859 16.4571,25.4767 16.6861,27.6164 16.9084,29.7868 17.1245,31.9728 17.335,34.1571 17.5402,36.3224 17.7404,38.4523 17.9361,40.5304 18.1283,42.5388 18.3167,44.4618 18.5024,46.2823 18.6855,47.9831 18.8666,49.5479 19.0458,50.9596 19.2242,52.2015 19.4018,53.2575 19.579,54.1096 19.7564,54.7419 19.9346,55.1368 20.114,55.2787 20.3337,55.1534 20.5441,54.7661 18.9149,59.196 18.6519,59.6798 18.3775,59.8366 18.1532,59.6598 17.9304,59.1655 17.7086,58.3754 17.4871,57.3097 17.265,55.9903 17.0423,54.4377 16.818,52.6729 16.5919,50.717 16.3629,48.5909 16.1309,46.3156 15.8951,43.9118 15.6551,41.4012 15.4103,38.8036 15.1599,36.141 14.9033,33.4344 14.6407,30.7043 14.3704,27.9718 14.0925,25.258 13.8063,22.5839 13.5114,19.9701 13.2069,17.438 12.8924,15.009 12.5674,12.7032 12.2313,10.5418 11.883,8.5458 11.5229,6.7363 11.1497,5.1345 10.7633,3.7615" /&gt;&lt;polygon style="fill:url(#id_#d28e80);stroke:none;" points="56.1668,56.8968 50.3457,52.9266 50.4902,52.9972 50.63,53.0141 50.7648,52.982 50.8965,52.9024 51.0238,52.7798 51.1481,52.6161 51.2686,52.4147 51.3872,52.1783 51.5027,51.9101 51.6164,51.6134 51.7283,51.2895 51.8385,50.9434 51.9478,50.5768 52.0561,50.1937 52.1639,49.7964 52.2717,49.3876 52.3797,48.9706 52.4881,48.5483 52.5974,48.1236 52.7074,47.7 52.8194,47.2798 52.9331,46.8666 53.049,46.4623 53.1667,46.0709 53.2883,45.6943 53.4119,45.3375 60,47.4093 59.8448,47.8561 59.6937,48.3264 59.5458,48.8158 59.4014,49.3208 59.2591,49.8379 59.1195,50.3633 58.9816,50.8925 58.845,51.4238 58.7092,51.9512 58.5744,52.4725 58.4398,52.9833 58.305,53.4804 58.1698,53.9597 58.033,54.4173 57.8951,54.8499 57.7555,55.2542 57.6133,55.6255 57.4686,55.9613 57.3209,56.2565 57.1694,56.5081 57.0146,56.713 56.8554,56.8663 56.6913,56.9653 56.5224,57.0062 56.3475,56.984" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="51.4421,42.8884 46.5659,41.7203 46.7028,41.8023 46.8376,41.9525 46.9702,42.1664 47.1013,42.4378 47.231,42.761 47.3586,43.131 47.485,43.5425 47.6101,43.9887 47.7331,44.4656 47.8552,44.9675 47.9761,45.488 48.0958,46.0228 48.2148,46.5658 48.3322,47.1106 48.4494,47.6533 48.5655,48.188 48.6806,48.7082 48.795,49.2094 48.9091,49.6863 49.0228,50.1321 49.1361,50.5433 49.2485,50.9129 49.3616,51.2355 49.5412,51.6837 49.7141,52.0613 49.8808,52.3714 50.0415,52.6172 50.1962,52.8009 50.3457,52.9266 56.1668,56.8968 55.98,56.7393 55.7863,56.5095 55.5857,56.2025 55.3774,55.8145 55.1615,55.3428 54.9367,54.7828 54.796,54.3789 54.6547,53.9171 54.5133,53.4035 54.3712,52.8463 54.2288,52.2499 54.0854,51.6235 53.9414,50.9728 53.7963,50.3052 53.6505,49.6264 53.503,48.9453 53.3548,48.2666 53.2051,47.5986 53.0539,46.9476 52.9015,46.3204 52.7472,45.7241 52.5913,45.1661 52.4332,44.6518 52.2736,44.1894 52.1118,43.7852 51.9481,43.446 51.7817,43.1788 51.6129,42.9908" /&gt;&lt;polygon style="fill:url(#id_#d28e80);stroke:none;" points="46.5072,55.376 42.6178,51.7104 42.8505,51.8235 43.0946,51.7695 43.3515,51.5269 43.6224,51.0766 43.9089,50.3965 44.2118,49.4669 44.5328,48.2673 44.873,46.7766 45.2338,44.9751 45.3918,44.1922 45.5468,43.528 45.6996,42.976 45.85,42.5312 45.9977,42.1879 46.143,41.9407 46.2862,41.784 46.4271,41.7127 46.5659,41.7203 51.4421,42.8884 51.2686,42.8787 51.0923,42.968 50.9139,43.1639 50.7321,43.473 50.5475,43.9021 50.3595,44.4587 50.1684,45.1481 49.9745,45.9788 49.7769,46.9562 49.326,49.2087 48.9008,51.0721 48.4993,52.5718 48.1208,53.7337 47.7629,54.5837 47.4244,55.1469 47.103,55.4494 46.7979,55.5179" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="42.7693,45.6178 39.6278,43.9039 39.843,44.061 40.0506,44.359 40.2515,44.7778 40.4475,45.2963 40.6388,45.8933 40.828,46.5502 41.015,47.2449 41.2027,47.9575 41.3909,48.6667 41.5816,49.3527 41.7764,49.9943 41.9763,50.5717 42.182,51.0638 42.3954,51.4504 42.6178,51.7104 46.5072,55.376 46.2289,55.0506 45.9622,54.5678 45.7048,53.9528 45.4555,53.2308 45.2122,52.4285 44.9734,51.5712 44.7381,50.6848 44.5038,49.7943 44.2696,48.9259 44.0336,48.1049 43.7941,47.358 43.5493,46.7098 43.2981,46.1868 43.0389,45.814" /&gt;&lt;polygon style="fill:url(#id_#d28e80);stroke:none;" points="37.2968,58.9458 35.2497,54.5661 35.4034,54.8741 35.5619,55.0825 35.7257,55.1839 35.8945,55.1721 36.0692,55.0399 36.2492,54.781 36.4354,54.3885 36.6279,53.8562 36.8266,53.1772 37.0321,52.3448 37.2442,51.3518 37.4635,50.1923 37.789,48.4808 38.0959,47.0746 38.3862,45.9539 38.6604,45.0973 38.9205,44.4843 39.1677,44.0949 39.403,43.9084 39.6278,43.9039 42.7693,45.6178 42.4887,45.6233 42.1944,45.857 41.8857,46.3439 41.5604,47.1099 41.2175,48.1807 40.8548,49.5814 40.4708,51.339 40.0643,53.4783 39.7901,54.9278 39.5249,56.1689 39.2682,57.2097 39.0199,58.059 38.7793,58.7239 38.5464,59.214 38.3212,59.5379 38.103,59.7034 37.8918,59.7179 37.6872,59.5912 37.4889,59.331" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="18.9149,59.196 20.5441,54.7661 20.7465,54.1348 20.9416,53.2765 21.1309,52.2081 21.3148,50.9479 21.4944,49.5115 21.6709,47.9184 21.845,46.1844 22.0182,44.3275 22.1908,42.3647 22.3646,40.3133 22.5398,38.1907 22.7176,36.0147 22.8994,33.8023 23.0856,31.5706 23.2776,29.3372 23.4763,27.1193 23.6825,24.9344 23.8976,22.7999 24.122,20.7326 24.3571,18.7501 24.604,16.87 24.8633,15.1097 25.136,13.4858 25.4234,12.0162 25.7263,10.7186 26.0457,9.6097 26.3825,8.7074 26.7381,8.028 27.1129,7.5891 27.5082,7.4095 27.811,7.4389 28.1009,7.5919 28.3782,7.8622 28.6434,8.2436 28.897,8.7289 29.1391,9.3117 29.3705,9.9866 29.5914,10.746 29.8025,11.5843 30.0038,12.4942 30.1959,13.4695 30.3792,14.5047 30.554,15.5915 30.7211,16.7254 30.8809,17.8987 31.0334,19.1055 31.1792,20.3387 31.3186,21.5923 31.4523,22.8601 31.5807,24.1355 31.7039,25.4116 31.8227,26.6825 31.9373,27.9413 32.0481,29.1818 32.1555,30.3977 32.26,31.5821 32.3622,32.7287 32.4623,33.8314 32.5607,34.8832 32.6577,35.878 32.7541,36.809 32.8501,37.6701 32.9535,38.5773 33.0575,39.5183 33.162,40.4857 33.2674,41.4735 33.3736,42.4744 33.4814,43.4823 33.5907,44.4902 33.7016,45.4922 33.8144,46.48 33.9295,47.4484 34.0471,48.3901 34.1672,49.2987 34.2902,50.1671 34.4164,50.9887 34.5457,51.7574 34.6785,52.4656 34.8151,53.1072 34.9556,53.6756 35.1004,54.1643 35.2497,54.5661 37.2968,58.9458 37.1103,58.4435 36.9294,57.833 36.7537,57.1225 36.583,56.3202 36.4168,55.4348 36.2552,54.474 36.0976,53.4468 35.9439,52.3617 35.7939,51.2258 35.6469,50.049 35.5031,48.8383 35.3619,47.6034 35.2232,46.3512 35.0866,45.0914 34.952,43.8312 34.819,42.58 34.6873,41.3454 34.5565,40.1361 34.4267,38.9601 34.2976,37.8262 34.1775,36.7495 34.0572,35.5855 33.9356,34.3416 33.8127,33.0267 33.6876,31.6489 33.5602,30.2153 33.4294,28.735 33.295,27.2152 33.1565,25.665 33.0132,24.0912 32.8648,22.5026 32.7107,20.9077 32.5502,19.3136 32.3831,17.7291 32.2088,16.1615 32.0266,14.6203 31.836,13.1113 31.6365,11.6452 31.4275,10.2275 31.2089,8.869 30.9797,7.5753 30.7395,6.3559 30.4879,5.2186 30.2242,4.1706 29.9481,3.2212 29.6587,2.3781 29.356,1.6492 29.0392,1.0425 28.7077,0.5659 28.3609,0.2281 27.9986,0.0363 27.6202,0 27.1258,0.225 26.6575,0.7729 26.2132,1.6219 25.7921,2.7505 25.3928,4.1367 25.0141,5.7586 24.6548,7.5957 24.3139,9.6253 23.9898,11.8255 23.6812,14.1759 23.3874,16.6537 23.1069,19.2378 22.8382,21.9059 22.5802,24.6374 22.3321,27.4097 22.092,30.2018 21.8591,32.9911 21.6319,35.7565 21.4095,38.4765 21.1904,41.1298 20.9735,43.6941 20.7575,46.1473 20.5414,48.4687 20.3235,50.636 20.1028,52.6279 19.8782,54.4228 19.6482,55.9983 19.412,57.3339 19.168,58.4069" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e16" name="IFN-alpah4" type="cso30:c:mRNA">
<csml:entitySimulationProperty>
<csml:variable variableID="m16" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="751.0" y="1460.2456747404847"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="42.66435986159169" height="22.75432525951557" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="37" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearChromosome">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e17" name="IFN-alpha7" type="cso30:c:mRNA">
<csml:entitySimulationProperty>
<csml:variable variableID="m17" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="810.0" y="1486.2595155709344"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="35.13840830449827" height="18.740484429065745" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="37" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e18" name="IFN-alpha14" type="cso30:c:mRNA">
<csml:entitySimulationProperty>
<csml:variable variableID="m18" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="682.0" y="1514.6851211072665"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="39.96539792387543" height="21.314878892733564" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="37" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e19" name="cullin1" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m19" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="638.0" y="717.1400000000001"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.48" height="21.360000000000003" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="34" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e20" name="cullin1:IRF-3" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m20" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="744.0" y="570.4861878453039"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.76243093922652" height="27.513812154696133" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="29" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e21" name="cullin1:IRF-3{ub}" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m21" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="561.0" y="572.132596685083"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.480662983425418" height="23.867403314917137" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="29" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000019479" name="protein remnants" refUnificationXrefID="ref67;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m360980" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="436.0" y="684.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="32.0" height="32.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_ab834f" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#ab834f;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_ab834f);stroke:none;" d="M 60 30 l -34.9569 -27.9966 l -17.8713 -2.0034 l -7.1718 43.775 l 7.1718 16.225 l 42.128 -15.7784 l 10.7001 -14.2216 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000017197" name="Pin1" refUnificationXrefID="ref68;ref69;ref70;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m2065" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1243.0" y="875.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.0" height="26.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_71af57" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#71af57;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_71af57);stroke:none;" d="M 55.9973 48.5409 l 4.0027 -12.6328 l -5.9647 -16.5779 c -1.7609 -1.6427 1.8442 -1.4692 1.962 -7.8713 l -10.5532 -7.7831 l -17.3152 0.6581 c -2.0771 1.1991 -0.8011 -2.2416 -6.7399 -4.3338 l -10.525 7.8228 l -4.7364 16.9844 c 0.4771 2.3837 -2.3395 0.084 -6.1275 5.1928 l 4.0485 12.6179 l 14.3876 9.8389 c 2.3719 0.2743 -0.6448 2.2931 2.9532 7.5431 l 13.027 -0.0245 l 13.6287 -10.9035 c 0.9889 -2.2142 1.9412 1.3333 7.9526 -0.5308 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e22" name="IRF-3{p}:pin1" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m22" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1126.0" y="940.232044198895"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.59116022099447" height="31.767955801104964" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="29" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e23" name="Pin1:IRF-3{ub}n" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m23" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1127.0" y="1058.0441988950276"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="25.16022099447514" height="27.955801104972373" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="29" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000069094" name="ISG15" refUnificationXrefID="ref71;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m43938" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1148.0" y="696.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.0" height="24.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_1a48ca" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#1a48ca;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_1a48ca);stroke:none;" d="M 60 48.541 c 3.9472 -0.8534 1.051 -6.2597 -7.0625 -9.3328 l 3.5617 -4.594 c -0.2 -4.4228 0.4765 -0.1613 -0.0135 -5.4958 l -4.0822 -2.4405 l 7.5965 -15.219 c 0.3665 -3.834 -5.935 -2.8852 -11.5153 3.5042 l -3.4932 -4.6411 c -4.4847 -1.1859 -0.0138 -0.4809 -5.5 -1.6861 l -3.7019 2.9381 l -12.8715 -11.5742 c -3.7209 -1.5163 -4.7189 4.4768 -0.0543 11.4988 l -5.7208 1.7253 c -2.5716 3.6899 -0.4852 -0.1359 -3.3859 4.4538 l 1.7943 4.2563 l -15.5515 8.066 c -2.6661 2.897 3.0184 5.6518 11.4817 3.6023 l -0.0422 5.7074 c 2.8952 3.4664 -0.2858 0.3969 3.4074 4.4386 l 4.8106 -0.3077 l 3.2603 16.5592 c 2.0729 3.3068 6.5846 -0.9838 7.1504 -9.2722 l 5.6945 1.802 c 4.3611 -1.5476 0.3087 0.3815 5.4917 -1.7105 l 1.179 -4.4465 l 17.5666 2.1683 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e24" name="IRF-3{p}:ISG15" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m24" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1244.0" y="767.1436464088399"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.2707182320442" height="25.85635359116023" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="29" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000066987" name="DDX58" refUnificationXrefID="ref72;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m41844" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="842.0" y="482.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.0" height="28.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_75175a" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#75175a;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_75175a);stroke:none;" d="M 55.1649 47.5686 c 0.5601 -7.2179 4.714 10.4493 -1.2168 -14.4358 c 2.6176 -7.4525 9.2483 -0.5606 -1.731 -25.2694 c 2.8438 -1.6074 6.452 -2.3695 7.7829 16.8886 c 2.2607 -1.648 3.0198 0.1667 -4.8357 -13.094 c -6.6798 -2.7638 11.3773 -1.2622 -14.0813 -3.302 c -6.2663 -4.7972 2.3258 -8.9846 -24.525 -6.1598 c -0.6471 -3.2063 -0.2561 -6.8791 18.4384 -2.1963 c -0.8663 -2.6634 1.0914 -2.8258 -13.9255 0.5606 c -4.6884 5.5095 2.3178 -11.2295 -7.4858 12.3956 c -6.4904 4.4877 -7.8112 -4.9922 -13.4267 21.4624 c -3.2439 -0.3741 -6.6099 -1.8821 3.6125 -18.246 c -2.7963 0.0021 -2.3455 -1.9131 -3.7709 13.4408 c 3.7821 6.1695 -9.9444 -5.6778 9.4547 10.9623 c 2.2549 7.5706 -7.1529 5.8991 16.2273 19.4243 c -1.3576 2.9749 -3.8296 5.7158 -16.206 -9.0802 c -0.862 2.6644 -2.5413 1.6432 11.5949 7.7464 c 7.026 -1.6967 -8.4636 7.7202 13.3291 -5.6201 c 7.8837 0.1913 3.39 8.6378 23.4555 -9.4575 c 2.4048 2.2129 4.243 5.4144 -13.6284 12.6339 c 2.2634 1.6448 0.7751 2.929 10.9372 -8.6533 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e25" name="ddx58:dsRNA" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m25" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="972.5" y="529.7647058823529"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.058823529411764" height="28.235294117647058" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000103999" name="IFIH1" refUnificationXrefID="ref73;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m76904" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="787.0" y="427.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="34.0" height="34.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_1ec8f1" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#1ec8f1;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_1ec8f1);stroke:none;" d="M 60 48.5418 c -2.9644 -1.7553 -2.5903 -6.4943 -2.5531 -2.2866 c 4.9418 -1.2857 7.2631 -6.8443 -4.1717 -7.7833 l 6.3504 -2.0842 l 0.3744 -24.9285 c -2.6713 2.1389 -7.2945 0.3361 -3.0755 1.6028 c 0.2413 -4.8673 -4.5994 -8.6848 -9.0725 1.3684 l -0.1216 -6.3883 l -24.8123 -8.0421 c 1.3134 3.0773 -1.918 6.7021 0.6523 3.2769 c -4.7925 -1.7224 -10.1058 1.4769 -1.4353 8.6289 l -6.4257 -1.8641 l -15.7093 19.9582 c 3.4829 -0.2371 6.1091 3.8057 3.4785 0.4225 c -3.2035 3.8027 -1.6462 9.5975 8.1852 3.9646 l -3.8497 5.2361 l 15.1034 20.3768 c 0.8393 -3.2237 5.6937 -4.35 1.4976 -3.0159 c 2.8126 4.0727 9.0884 4.4548 6.494 -6.1787 l 4.0466 5.1002 l 25.0438 -7.3647 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e26" name="dsRNA:IFIH1" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m26" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="689.5" y="483.9641726378936"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.44592567905349" height="25.035827362106318" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000094908" name="MAVS" refUnificationXrefID="ref74;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m68199" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="939.0" y="395.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.0" height="26.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_27af0a" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#27af0a;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_27af0a);stroke:none;" d="M 59.9992 48.5408 c -4.8875 -0.5772 -6.444 -4.509 -4.4684 -8.7121 l -5.1097 -15.2681 c -2.3994 -10.3754 10.5012 -2.7373 9.578 -13.1018 c -2.0877 4.2424 -6.5002 4.4351 -10.0928 1.3497 l -16.847 -0.0964 c -11.1166 -1.0359 0.5075 -10.3444 -10.1418 -12.7122 c 3.5976 3.1992 2.4265 7.2499 -1.7691 9.5461 l -5.3024 15.2088 c -4.4714 9.7352 -10.1876 -3.6557 -15.8461 5.2451 c 4.3108 -2.2652 8.0001 0.0455 8.9994 4.5501 l 13.5703 9.4959 c 8.3535 7.0524 -6.8039 8.085 0.3484 15.954 c -0.9331 -4.5992 2.5176 -7.2219 7.3313 -6.7338 l 13.6892 -9.3399 c 9.6339 -5.3764 5.9824 8.6524 16.0614 4.6148 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e27" name="dsRNA:DDX58:MAVS" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m27" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="926.5" y="478.49403560286305"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.712607817948246" height="27.50596439713709" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e28" name="dsRNA:IFIH1:MAVS" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m28" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="670.5" y="374.6922371077262"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.570563406129562" height="27.307762892273804" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e29" name="LGP2" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m29" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="869.0" y="623.1675387401892"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="29.728315556449996" height="18.33246125981083" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="11" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e30" name="DDX58:LGP2" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m30" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="982.5" y="576.0139976670555"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.588568571904684" height="23.986002332944512" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016963" name="TRAF3" refUnificationXrefID="ref75;ref76;ref77;ref78;ref79;ref80;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1872" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="875.0" y="335.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="25.0" height="25.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_8b1527" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#8b1527;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_8b1527);stroke:none;" d="M 52.8059 47.4706 c -7.7431 -3.717 11.6089 -12.322 7.1941 -19.4363 l -0.9501 -11.2137 l -6.244 -1.3273 c -5.8784 6.3193 -7.9683 -15.0039 -16.0049 -12.9444 l -10.8101 -2.5489 l -3.1742 5.6121 c 4.11 7.6223 -16.5332 3.0487 -17.0856 11.4363 l -5.7311 9.6382 l 4.2819 4.7956 c 8.4188 -1.6086 -2.2498 16.888 5.4452 20.0122 l 7.2681 8.5056 l 5.8205 -2.6483 c 1.0928 -8.6166 15.143 7.3886 20.4506 0.9322 l 10.2227 -4.3818 l -0.6848 -6.4321 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e31" name="dsRNA:DDX58:MAVS:TRAF3" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m31" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1056.0" y="338.6470588235294"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="16.411764705882355" height="27.352941176470594" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e32" name="dsRNA:IFIH1:MAVS:TRAF3" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m32" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="546.0" y="330.44117647058823"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.73529411764706" height="34.558823529411775" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e33" name="dsRNA:DDX58:MAVS:TRAF3:ikk-i" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m33" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1072.0" y="604.1764705882355"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.29411764705882" height="38.82352941176472" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000023" name="JNK" refUnificationXrefID="ref81;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m34" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1118.0" y="654.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.0" height="28.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_e9a5de" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#e9a5de;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_e9a5de);stroke:none;" d="M 60 42.4263 c -4.0591 -1.9395 -4.5527 -0.7149 -3.968 -6.1295 c -0.4063 -4.6115 -1.0858 -6.7206 0.5173 -4.6501 l -8.4488 -25.0217 l -5.6742 -6.625 c -1.9395 4.0591 -0.7149 4.5527 -6.1295 3.968 c -4.6115 0.4063 -6.7206 1.0858 -4.6501 -0.5173 l -25.0217 8.4488 l -6.625 5.6742 c 4.0591 1.9395 4.5527 0.7149 3.968 6.1295 c 0.4063 4.6115 1.0858 6.7206 -0.5173 4.6501 l 8.4488 25.0217 l 5.6742 6.625 c 1.9395 -4.0591 0.7149 -4.5527 6.1295 -3.968 c 4.6115 -0.4063 6.7206 -1.0858 4.6501 0.5173 l 25.0217 -8.4488 l 6.625 -5.6742 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e34" name="JNK{active}" refUnificationXrefID="ref82;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m35" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1198.0" y="710.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.0" height="28.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_e9a5de" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#e9a5de;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_e9a5de);stroke:none;" d="M 60 42.4263 c -4.0591 -1.9395 -4.5527 -0.7149 -3.968 -6.1295 c -0.4063 -4.6115 -1.0858 -6.7206 0.5173 -4.6501 l -8.4488 -25.0217 l -5.6742 -6.625 c -1.9395 4.0591 -0.7149 4.5527 -6.1295 3.968 c -4.6115 0.4063 -6.7206 1.0858 -4.6501 -0.5173 l -25.0217 8.4488 l -6.625 5.6742 c 4.0591 1.9395 4.5527 0.7149 3.968 6.1295 c 0.4063 4.6115 1.0858 6.7206 -0.5173 4.6501 l 8.4488 25.0217 l 5.6742 6.625 c 1.9395 -4.0591 0.7149 -4.5527 6.1295 -3.968 c 4.6115 -0.4063 6.7206 -1.0858 4.6501 0.5173 l 25.0217 -8.4488 l 6.625 -5.6742 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000248" name="IKK" refUnificationXrefID="ref83;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m207" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1290.0" y="954.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.0" height="28.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_11f29d" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#11f29d;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_11f29d);stroke:none;" d="M 60 42.4263 c -0.3693 -0.8655 8.2994 -5.4905 -7.9574 -3.6103 c -2.2005 -5.1493 6.1278 -2.0621 -11.4802 -10.6206 l 1.864 -28.1954 c -0.8655 0.3693 -5.4905 -8.2994 -3.6103 7.9574 c -5.1493 2.2005 -2.0621 -6.1278 -10.6206 11.4802 l -28.1954 -1.864 c 0.3693 0.8655 -8.2994 5.4905 7.9574 3.6103 c 2.2005 5.1493 -6.1278 2.0621 11.4802 10.6206 l -1.864 28.1954 c 0.8655 -0.3693 5.4905 8.2994 3.6103 -7.9574 c 5.1493 -2.2005 2.0621 6.1278 10.6206 -11.4802 l 28.1954 1.864 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e35" name="IKK{active}" refUnificationXrefID="ref84;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m36" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1262.0" y="1098.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.0" height="28.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_11f29d" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#11f29d;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_11f29d);stroke:none;" d="M 60 42.4263 c -0.3693 -0.8655 8.2994 -5.4905 -7.9574 -3.6103 c -2.2005 -5.1493 6.1278 -2.0621 -11.4802 -10.6206 l 1.864 -28.1954 c -0.8655 0.3693 -5.4905 -8.2994 -3.6103 7.9574 c -5.1493 2.2005 -2.0621 -6.1278 -10.6206 11.4802 l -28.1954 -1.864 c 0.3693 0.8655 -8.2994 5.4905 7.9574 3.6103 c 2.2005 5.1493 -6.1278 2.0621 11.4802 10.6206 l -1.864 28.1954 c 0.8655 -0.3693 5.4905 8.2994 3.6103 -7.9574 c 5.1493 -2.2005 2.0621 6.1278 10.6206 -11.4802 l 28.1954 1.864 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e36" name="TBK1" refUnificationXrefID="ref85;ref86;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m37" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="955.0" y="663.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.0" height="26.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_d73c10" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#d73c10;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_d73c10);stroke:none;" d="M 59.9986 48.5407 c 0.9871 -13.4342 0.1887 -4.8076 -15.7675 -1.0439 c 3.9483 -9.4993 10.8696 -9.6801 13.1979 -13.904 l 2.57 -22.1338 c -13.1289 -5.0441 -4.7493 -1.6563 -5.9165 13.9392 c -8.279 -6.5065 -6.3213 -12.8227 -9.8259 -16.234 l -21.3394 -9.1642 c -9.1011 10.3168 -3.1239 3.7841 12.1112 9.6592 c -9.065 5.4778 -14.7763 1.7554 -19.2702 3.8711 l -15.7584 16.47 c 7.504 11.4202 2.8186 3.9949 13.4017 -7.9699 c 2.677 9.8921 -2.8109 13.9075 -2.0838 18.6265 l 11.6003 19.3432 c 13.739 -3.2587 4.8659 -1.3151 -3.8285 -14.5846 c 10.7193 0.6358 13.0389 6.8403 17.9825 7.6409 l 22.9278 -4.5152 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000055971" name="ATF-2:c-Jun" refUnificationXrefID="ref87;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m31298" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="435.0" y="1347.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.0" height="26.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_17bca0" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#17bca0;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_17bca0);stroke:none;" d="M 43.9766 40.7972 l -4.6312 -0.6238 l 1.2812 -2.2762 c 1.3868 -5.0926 -5.039 -5.956 6.5966 -5.6742 l 2.7768 -13.3475 c 0.9594 -6.6558 0.8504 -0.3802 -6.0234 -6.2843 l -2.0152 4.28 l -1.7357 -1.9408 c -4.3408 -2.9132 -7.1351 3.026 -3.2755 -8.1243 l -11.6422 -6.8062 c -5.9368 -2.9833 -0.0932 -0.9388 -7.7467 3.8755 l 3.3855 3.2688 l -2.354 1.0766 c -4.0695 3.2921 0.6292 7.8263 -8.6208 0.653 l -9.9721 9.141 c -4.6286 4.8118 -0.9082 -0.1999 1.2356 8.6795 l 4.1077 -2.2597 l 0.2808 2.6063 c 1.8256 4.9479 7.5238 1.8107 -2.0525 8.528 l 5.4792 12.4558 c 3.0761 5.9572 -0.4678 0.8152 8.5103 1.4887 l -0.8471 -4.6653 l 2.5276 0.5342 c 5.1979 -0.2342 4.0208 -6.7071 7.3525 4.6175 l 13.3583 -1.4429 c 6.5296 -1.13 0.6188 0.7038 4.0242 -7.7593 z" /&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_dd65c1" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#dd65c1;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_dd65c1);stroke:none;" d="M 56.3472 50.1642 l 1.2864 -13.6831 c -2.1119 -1.9565 -4.0587 -0.8609 1.1336 -1.5532 l 1.2328 -11.8296 c -0.8601 -1.8371 2.085 -0.3805 -3.6528 -1.3009 l -12.769 -5.4375 c -2.5353 1.3804 -2.0827 3.5491 -1.1443 -1.5456 l -11.002 -4.8143 c -2.0335 0.2408 0.2782 -2.0774 -2.3807 3.0317 l -9.178 10.3225 c 0.545 2.8098 2.7715 3.0544 -1.8408 0.5981 l -8.0324 8.8542 c -0.3967 1.986 -1.9131 -0.9034 2.1815 3.1747 l 7.0966 11.8172 c 2.8721 0.3561 3.7956 -1.6613 0.0066 1.9152 l 6.0377 10.2866 c 1.7884 0.9866 -1.4605 1.5192 3.7288 -1.0697 l 13.564 -3.0192 c 1.2302 -2.5898 -0.4258 -4.0812 1.845 0.5856 l 11.7639 -2.4967 c 1.502 -1.3762 1.0104 1.8423 0.123 -3.8358 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e37" name="ATF-2:c-Jun{active}" refUnificationXrefID="ref88;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m38" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="487.0" y="1475.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.0" height="26.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_17bca0" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#17bca0;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_17bca0);stroke:none;" d="M 43.9766 40.7972 l -4.6312 -0.6238 l 1.2812 -2.2762 c 1.3868 -5.0926 -5.039 -5.956 6.5966 -5.6742 l 2.7768 -13.3475 c 0.9594 -6.6558 0.8504 -0.3802 -6.0234 -6.2843 l -2.0152 4.28 l -1.7357 -1.9408 c -4.3408 -2.9132 -7.1351 3.026 -3.2755 -8.1243 l -11.6422 -6.8062 c -5.9368 -2.9833 -0.0932 -0.9388 -7.7467 3.8755 l 3.3855 3.2688 l -2.354 1.0766 c -4.0695 3.2921 0.6292 7.8263 -8.6208 0.653 l -9.9721 9.141 c -4.6286 4.8118 -0.9082 -0.1999 1.2356 8.6795 l 4.1077 -2.2597 l 0.2808 2.6063 c 1.8256 4.9479 7.5238 1.8107 -2.0525 8.528 l 5.4792 12.4558 c 3.0761 5.9572 -0.4678 0.8152 8.5103 1.4887 l -0.8471 -4.6653 l 2.5276 0.5342 c 5.1979 -0.2342 4.0208 -6.7071 7.3525 4.6175 l 13.3583 -1.4429 c 6.5296 -1.13 0.6188 0.7038 4.0242 -7.7593 z" /&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_dd65c1" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#dd65c1;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_dd65c1);stroke:none;" d="M 56.3472 50.1642 l 1.2864 -13.6831 c -2.1119 -1.9565 -4.0587 -0.8609 1.1336 -1.5532 l 1.2328 -11.8296 c -0.8601 -1.8371 2.085 -0.3805 -3.6528 -1.3009 l -12.769 -5.4375 c -2.5353 1.3804 -2.0827 3.5491 -1.1443 -1.5456 l -11.002 -4.8143 c -2.0335 0.2408 0.2782 -2.0774 -2.3807 3.0317 l -9.178 10.3225 c 0.545 2.8098 2.7715 3.0544 -1.8408 0.5981 l -8.0324 8.8542 c -0.3967 1.986 -1.9131 -0.9034 2.1815 3.1747 l 7.0966 11.8172 c 2.8721 0.3561 3.7956 -1.6613 0.0066 1.9152 l 6.0377 10.2866 c 1.7884 0.9866 -1.4605 1.5192 3.7288 -1.0697 l 13.564 -3.0192 c 1.2302 -2.5898 -0.4258 -4.0812 1.845 0.5856 l 11.7639 -2.4967 c 1.502 -1.3762 1.0104 1.8423 0.123 -3.8358 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e38" name="NF-kappaB" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m39" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1229.0" y="1171.7458563535913"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.828729281767956" height="24.25414364640884" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="29" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e39" name="NF-kappaB{active}" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m40" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1290.0" y="1315.900552486188"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.889502762430936" height="32.09944751381216" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="29" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e40" name="IFN-beta" type="cso30:c:Dna">
<csml:entitySimulationProperty>
<csml:variable variableID="m41" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="626.0" y="1571.2594654788418"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="52.11581291759465" height="18.240534521158132" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="44" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e41" name="IFN-beta enhancesome complex" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m42" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="846.0" y="1573.048470043713"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="51.00539984571869" height="14.451529956286965" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="4" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000019398" name="TLR3" refUnificationXrefID="ref89;ref90;ref91;ref92;ref93;ref94;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m3965" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="325.0" y="593.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="30.0" height="30.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_933f3f" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#933f3f;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_933f3f);stroke:none;" d="M 60 48.54 l -0.3772 -11.808 c 13.6534 -12.4868 26.6272 14.8035 0.3772 -25.2737 l -11.9246 -3.3074 c -8.2669 -16.2079 23.0311 -19.5108 -25.1571 -8.1508 l -6.993 9.7635 c -18.7631 2.4691 -12.3928 -26.8612 -15.9253 20.2365 l 7.6025 9.3425 c -3.3288 17.7341 -30.6905 2.909 15.3149 20.6575 l 11.6914 -3.9898 c 16.7054 8.4916 -6.575 28.6596 25.3903 -7.4684 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000041446" name="dsRNA:TLR3" refUnificationXrefID="ref95;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m19314" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="318.0" y="670.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.0" height="28.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_691efd" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#691efd;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_691efd);stroke:none;" d="M 49.9997 25.0002 l -12.8898 -3.128 c -7.7419 0.4334 -2.5399 -5.5634 -5.8173 -5.7503 l -26.7073 -4.8992 c -7.4971 1.6382 1.3038 -5.4518 -4.5852 -11.2225 l 3.3172 11.2316 c 4.3044 5.5897 -4.2933 4.6867 -2.8418 7.2381 l 8.4543 22.4801 c 5.3869 4.8036 -6.1039 1.7481 -8.9298 9.0503 l 9.573 -8.1035 c 3.4375 -6.0231 6.8332 0.8768 8.6588 -1.4878 l 18.253 -17.5811 c 2.1102 -6.4418 4.8 3.7038 13.5152 2.1722 z" /&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_933f3f" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#933f3f;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_933f3f);stroke:none;" d="M 60 50.45 l -0.3143 -9.84 c 11.3778 -10.4057 22.1893 12.3362 0.3143 -21.0614 l -9.9372 -2.7562 c -6.8891 -13.5066 19.1926 -16.259 -20.9642 -6.7923 l -5.8275 8.1362 c -15.6359 2.0576 -10.3273 -22.3843 -13.2711 16.8638 l 6.3354 7.7854 c -2.774 14.7784 -25.5754 2.4242 12.7624 17.2146 l 9.7428 -3.3248 c 13.9212 7.0763 -5.4792 23.883 21.1586 -6.2237 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000041437" name="dsRNA:TLR3:TRIF" refUnificationXrefID="ref96;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m19305" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="326.0" y="770.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.0" height="28.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_691efd" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#691efd;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_691efd);stroke:none;" d="M 42.8569 21.4287 l -11.0484 -2.6811 c -6.6359 0.3715 -2.1771 -4.7686 -4.9863 -4.9289 l -22.892 -4.1994 c -6.4261 1.4042 1.1176 -4.673 -3.9301 -9.6193 l 2.8433 9.6271 c 3.6895 4.7911 -3.68 4.0171 -2.4359 6.2041 l 7.2466 19.2686 c 4.6174 4.1174 -5.2319 1.4984 -7.6541 7.7574 l 8.2054 -6.9459 c 2.9464 -5.1626 5.8571 0.7515 7.4218 -1.2752 l 15.6454 -15.0695 c 1.8087 -5.5216 4.1143 3.1746 11.5845 1.8619 z" /&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_933f3f" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#933f3f;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_933f3f);stroke:none;" d="M 60 51.8143 l -0.2694 -8.4343 c 9.7524 -8.9191 19.0194 10.5739 0.2694 -18.0526 l -8.5176 -2.3624 c -5.9049 -11.5771 16.4508 -13.9363 -17.9694 -5.822 l -4.995 6.9739 c -13.4022 1.7636 -8.852 -19.1866 -11.3752 14.4546 l 5.4304 6.6732 c -2.3777 12.6672 -21.9218 2.0779 10.9392 14.7554 l 8.351 -2.8499 c 11.9324 6.0654 -4.6964 20.4711 18.1359 -5.3346 z" /&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_59ab14" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#59ab14;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_59ab14);stroke:none;" d="M 42.8571 51.8154 c 0.5788 -5.2836 1.6581 -14.1476 -2.5284 -14.4022 c 6.8411 -7.3619 -1.8188 -5.408 2.5284 -12.0852 c -5.1048 -2.1562 -13.6352 -5.8716 -15.1834 -2.1637 c -5.2477 -8.4628 -5.9699 -0.0261 -11.3038 -6.0214 c -3.7335 3.9511 -10.0852 10.5184 -6.8556 13.0648 c -10.0843 2.1314 -1.8709 5.3916 -9.5144 8.364 c 2.7976 4.5981 7.4022 12.3726 10.9461 10.2381 c -0.9848 9.7802 4.8137 3.3585 5.4237 11.1902 c 5.4624 -1.1094 14.6601 -2.8719 13.6208 -6.7374 c 9.4761 3.913 4.8459 -3.3164 12.8664 -1.4476 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000041125" name="TRIF" refUnificationXrefID="ref97;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m18998" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="451.0" y="731.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="25.0" height="25.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_59ab14" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#59ab14;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_59ab14);stroke:none;" d="M 60 48.5415 c 0.8103 -7.397 2.3214 -19.8066 -3.5398 -20.1631 c 9.5776 -10.3066 -2.5463 -7.5712 3.5398 -16.9193 c -7.1467 -3.0187 -19.0893 -8.2203 -21.2568 -3.0292 c -7.3468 -11.8479 -8.3579 -0.0366 -15.8253 -8.4299 c -5.2269 5.5315 -14.1193 14.7258 -9.5978 18.2907 c -14.118 2.984 -2.6193 7.5483 -13.3201 11.7096 c 3.9166 6.4373 10.3631 17.3217 15.3246 14.3334 c -1.3787 13.6923 6.7392 4.7019 7.5932 15.6663 c 7.6473 -1.5531 20.5241 -4.0206 19.0691 -9.4324 c 13.2666 5.4782 6.7842 -4.643 18.013 -2.0267 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000212" name="TRAF6" refUnificationXrefID="ref98;ref99;ref100;ref101;ref102;ref103;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m183" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="475.0" y="435.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.0" height="26.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_8b1f27" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#8b1f27;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_8b1f27);stroke:none;" d="M 52.8059 47.4706 c -7.7431 -3.717 11.6089 -12.322 7.1941 -19.4363 l -0.9501 -11.2137 l -6.244 -1.3273 c -5.8784 6.3193 -7.9683 -15.0039 -16.0049 -12.9444 l -10.8101 -2.5489 l -3.1742 5.6121 c 4.11 7.6223 -16.5332 3.0487 -17.0856 11.4363 l -5.7311 9.6382 l 4.2819 4.7956 c 8.4188 -1.6086 -2.2498 16.888 5.4452 20.0122 l 7.2681 8.5056 l 5.8205 -2.6483 c 1.0928 -8.6166 15.143 7.3886 20.4506 0.9322 l 10.2227 -4.3818 l -0.6848 -6.4321 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e42" name="dsRNA:TLR3:TRIF:TRAF6" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m43" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="331.0" y="878.3235294117646"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.205882352941178" height="43.6764705882353" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Extracellular">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e43" name="dsRNA:TLR3:TRIF:TRAF3" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m44" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="331.0" y="945.5882352941177"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.64705882352941" height="44.411764705882355" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Extracellular">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000042126" name="TLR7" refUnificationXrefID="ref104;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m19940" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1219.0" y="403.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.0" height="26.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_bc3b31" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#bc3b31;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_bc3b31);stroke:none;" d="M 60 48.54 l -0.3772 -11.808 c 13.6534 -12.4868 26.6272 14.8035 0.3772 -25.2737 l -11.9246 -3.3074 c -8.2669 -16.2079 23.0311 -19.5108 -25.1571 -8.1508 l -6.993 9.7635 c -18.7631 2.4691 -12.3928 -26.8612 -15.9253 20.2365 l 7.6025 9.3425 c -3.3288 17.7341 -30.6905 2.909 15.3149 20.6575 l 11.6914 -3.9898 c 16.7054 8.4916 -6.575 28.6596 25.3903 -7.4684 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e47" name="dsRNA:TLR7" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m48" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1249.5" y="407.44332383249287"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.470949353212017" height="41.556676167507135" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="6" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Extracellular">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000042012" name="TLR9" refUnificationXrefID="ref105;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m19828" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1273.0" y="445.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_933448" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#933448;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_933448);stroke:none;" d="M 60 48.54 l -0.3772 -11.808 c 13.6534 -12.4868 26.6272 14.8035 0.3772 -25.2737 l -11.9246 -3.3074 c -8.2669 -16.2079 23.0311 -19.5108 -25.1571 -8.1508 l -6.993 9.7635 c -18.7631 2.4691 -12.3928 -26.8612 -15.9253 20.2365 l 7.6025 9.3425 c -3.3288 17.7341 -30.6905 2.909 15.3149 20.6575 l 11.6914 -3.9898 c 16.7054 8.4916 -6.575 28.6596 25.3903 -7.4684 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e48" name="dsRNA:TLR9" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m49" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1280.5" y="485.47993860995393"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="14.735365051523784" height="28.520061390046042" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="6" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Extracellular">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016573" name="MyD88" refUnificationXrefID="ref106;ref107;ref108;ref109;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1572" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1304.0" y="384.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.0" height="24.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_d14d35" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#d14d35;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_d14d35);stroke:none;" d="M 45.6589 40.7351 c -12.8034 -17.2246 -3.4958 -15.396 14.3411 -6.9145 c -5.6247 -21.6076 15.286 -16.8559 -23.1584 -3.4266 l 8.8172 -14.5467 c -20.2529 6.9178 -15.6471 -1.4149 -2.1102 -15.8473 c -22.1809 -1.2997 -11.2242 -19.8223 -10.3989 21.0812 l -11.038 -12.9242 c 0.2862 21.4997 -6.1744 14.5214 -15.6455 -2.8798 c -8.0838 20.8041 -22.2224 4.6053 16.7319 16.4554 l -15.639 6.5589 c 20.4302 6.3701 11.8309 10.3902 -7.5593 14.0677 c 17.1848 14.1568 -2.5103 22.6686 20.7392 -10.9109 l 1.3726 16.9777 c 12.3399 -17.563 13.4865 -8.0998 10.9738 11.5738 c 18.7046 -12.0544 20.6709 9.4044 -3.9138 -23.1991 l 16.4871 3.9342 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e49" name="dsRNA:TLR9:MYD88" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m63" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1273.5" y="517.8003303358415"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.209763259313636" height="28.199669664158556" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e63" name="dsRNA:TLR9:MYD88:IRAK4" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m64" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1268.0" y="555.1176470588235"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="15.529411764705884" height="25.88235294117647" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000039077" name="IRAK-4" refUnificationXrefID="ref110;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m17258" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1313.0" y="605.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_823e42" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#823e42;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_823e42);stroke:none;" d="M 53.1117 45.8329 c -1.171 -4.7103 0.7422 -4.435 6.8883 -9.5688 l -0.7383 -5.3439 l -1.9522 -9.4672 c -3.3869 -5.177 0.4165 -2.7857 -2.6392 -6.1659 l -1.5587 -3.7825 c -4.8658 -0.348 -4.0114 -2.0724 -7.0211 -9.4728 l -5.338 -0.953 l -9.6559 -1.0788 c -5.9968 1.6041 -2.5349 -1.2548 -6.7114 0.5909 l -4.0985 0.3055 c -1.8364 4.4953 -3.2214 3.1542 -11.2276 3.7144 l -2.5607 4.7549 l -4.0154 8.8004 c -0.3192 6.1685 -1.9833 2.0101 -1.5088 6.5312 l -0.9744 3.9714 c 3.731 3.1263 2.0205 4.022 0.0822 11.7684 l 3.7554 3.8917 l 7.1741 6.5178 c 5.7995 2.2082 1.3091 2.4973 5.7788 3.4456 l 3.4963 2.1488 c 4.1421 -2.5631 4.4699 -0.6685 11.2784 3.559 l 4.8816 -2.3497 l 8.4493 -4.7722 c 3.9035 -4.8036 2.7924 -0.4669 5.0805 -4.4018 l 3.135 -2.6432 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e64" name="IRAK1" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m65" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1221.0" y="624.9399999999998"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="30.079999999999995" height="22.560000000000002" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="34" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e65" name="dsRNA:TLR9:MYD88:IRAK4:IRAK1" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m66" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1237.0" y="577.0882352941177"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.147058823529417" height="36.911764705882355" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Extracellular">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e66" name="dsRNA:TLR9:MYD88:IRAK4:IRAK1:TRAF6" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m67" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1198.0" y="598.5882352941176"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.647058823529417" height="34.41176470588236" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e67" name="IRF-7{active}" refUnificationXrefID="ref111;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m68" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="421.0" y="1105.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="30.0" height="30.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_6aef48" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:mediumvioletred;stop-opacity:1;" offset="100%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 60 48.5413 c -5.4791 -8.878 6.0417 -4.3573 -9.8171 -2.9348 l -4.5651 -27.6151 c -1.9754 -5.4859 12.2339 -9.9822 14.3816 -6.5322 c -10.571 2.2124 -2.4899 -6.8115 -5.9681 7.9727 l -29.0256 -4.4044 c -6.096 0.0919 -6.2013 -14.1503 -2.0879 -15.0274 c -1.0542 10.2454 -7.5808 0.1474 6.1282 7.8622 l -13.374 24.8929 c -1.7923 5.5423 -16.0665 1.2366 -15.6721 -2.7553 c 9.9194 4.1194 -2.1948 6.9024 9.7557 -3.1134 l 20.7599 19.7894 c 4.9886 3.3337 -3.7283 14.915 -7.5982 13.3243 c 7.1844 -7.6993 6.2238 4.1184 -0.0987 -9.7867 l 26.2042 -12.6627 c 4.875 -3.4821 13.7627 7.9809 10.9766 10.9902 z" style="fill:url(#MO_6aef48);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e68" name="dsRNA:TLR7:MYD88" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m69" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1168.5" y="408.0234905487247"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.91649844008075" height="31.976509451275472" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e69" name="dsRNA:TLR7:MYD88:IRAK4" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m70" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1158.0" y="447.2058823529411"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.676470588235293" height="32.79411764705882" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e70" name="dsRNA:TLR7:MYD88:IRAK4:IRAK1" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m71" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1158.0" y="579.3529411764706"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.588235294117645" height="32.64705882352941" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e71" name="dsRNA:TLR7:MYD88:IRAK4:IRAK1:TRAF6" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m72" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1163.0" y="490.32352941176487"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.205882352941174" height="43.6764705882353" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e45" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m46" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1162.3444143136178" y="409.3693891870368"/>
<csml:shape shapeID="default" depth="60" visible="true">
<csml:image width="127.02907098022088" height="212.07395748392796" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20048" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_EndosomeMembrane">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e44" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m45" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1162.3444143136178" y="409.3693891870368"/>
<csml:shape shapeID="default" depth="60" visible="true">
<csml:image width="127.02907098022088" height="212.07395748392796" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20090" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_EndosomeLumen">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e46" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m47" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1162.3444143136178" y="409.3693891870368"/>
<csml:shape shapeID="default" depth="70" visible="true">
<csml:image width="127.02907098022088" height="212.07395748392796" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20010" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Endosome">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e3" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m3" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="320.15986312046084" y="244.4861277986073"/>
<csml:shape shapeID="default" depth="71" visible="true">
<csml:image width="1087.18104513211" height="1599.0621205484765" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20065" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e1" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m1" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="297.5102580135421" y="221.8365226916883"/>
<csml:shape shapeID="default" depth="81" visible="true">
<csml:image width="1132.4802553459476" height="1644.3613307623145" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e4" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m4" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="362.0616325682613" y="284.12293673571526"/>
<csml:shape shapeID="default" depth="71" visible="true">
<csml:image width="1003.3775062365097" height="1519.7885026742595" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20066" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e2" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m2" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="297.5102580135421" y="221.8365226916883"/>
<csml:shape shapeID="default" depth="71" visible="true">
<csml:image width="1132.4802553459476" height="1644.3613307623145" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20064" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e50" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m50" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="531.2297154674992" y="1085.9290377711814"/>
<csml:shape shapeID="default" depth="50" visible="true">
<csml:image width="640.9802691930895" height="581.2986798827458" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20112" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearEnvelopeLumen">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e56" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m56" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="540.7787697571539" y="1094.8812761677311"/>
<csml:shape shapeID="default" depth="50" visible="true">
<csml:image width="621.8821606137795" height="563.3942030896427" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20063" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e51" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m51" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="600.4603590674975" y="1099.7049714090456"/>
<csml:shape shapeID="default" depth="50" visible="true">
<csml:image width="374.8003808689576" height="563.3942030896427" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20021" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearPore">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e52" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m52" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="539.585137970947" y="1093.687644381526"/>
<csml:shape shapeID="default" depth="50" visible="true">
<csml:image width="624.269424186194" height="565.7814666620562" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20110" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearInnerMembrane">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e62" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m62" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="710.7743476072039" y="1396.4468814046838"/>
<csml:shape shapeID="default" depth="30" visible="true">
<csml:image width="10.845405424237653" height="10.845405424237654" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20115" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearCentromere">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e61" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m61" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="681.6273205295647" y="1315.106340722901"/>
<csml:shape shapeID="default" depth="40" visible="true">
<csml:image width="69.47837849902251" height="125.06108129824051" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20114" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearChromosome">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e60" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m60" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="682.3051583685802" y="1344.25336780054"/>
<csml:shape shapeID="default" depth="30" visible="true">
<csml:image width="20.29890330377214" height="9.773546035149556" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20043" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Chromatin">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e58" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m58" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="894.0937784743888" y="1491.7638450815168"/>
<csml:shape shapeID="default" depth="40" visible="true">
<csml:image width="113.39501968965267" height="102.65233361379094" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20062" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleolus">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e55" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m55" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="531.2297154674992" y="1085.9290377711814"/>
<csml:shape shapeID="default" depth="70" visible="true">
<csml:image width="640.9802691930895" height="581.2986798827458" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20025" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleus">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e54" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m54" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="531.2297154674992" y="1085.9290377711814"/>
<csml:shape shapeID="default" depth="50" visible="true">
<csml:image width="640.9802691930895" height="581.2986798827458" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20111" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearOuterMembrane">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e53" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m53" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="540.7787697571539" y="1094.8812761677311"/>
<csml:shape shapeID="default" depth="60" visible="true">
<csml:image width="621.8821606137795" height="563.3942030896427" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20113" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearLumen">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e57" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m57" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="999.1333756605926" y="1324.6553950125547"/>
<csml:shape shapeID="default" depth="40" visible="true">
<csml:image width="40.04492535048389" height="36.25119558043805" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20117" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearBody">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e59" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m59" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="531.2297154674992" y="1085.9290377711814"/>
<csml:shape shapeID="default" depth="60" visible="true">
<csml:image width="640.9802691930895" height="581.2986798827458" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20022" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearEnvelope">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:entity>
</csml:entitySet>
<csml:processSet>
<csml:process id="p1" name="p1" type="cso30:c:ProcessBiological">
<csml:connector id="c1" name="c1" refID="MO000007694" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="834.0" y="832.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="834.0 832.0 997.0 832.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="997.0 829.0 997.0 835.0 1005.0 832.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c5" name="c5" refID="MO000019331" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1012.0" y="745.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1012.0 745.0 1014.6844562662919 813.0062254127279" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1017.682121736519 812.8878965125873 1011.6867907960649 813.1245543128684 1015.0 821.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c7" name="c7" refID="MO000022224" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="848.0" y="623.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="848.0 623.0 1001.9909224063558 814.7622807324431" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1004.3300671316897 812.8838766348265 999.6517776810219 816.6406848300596 1007.0000000000001 821.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c2" name="c2" refID="MO000041456" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1025.0" y="842.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1025.0 842.0 1045.8591019041883 866.8704676549936" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1048.1576765335656 864.9426308690641 1043.5605272748107 868.798304440923 1051.0 872.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1005.0" y="821.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 9463386, 12692549, 9566918, 12702806
Transcriptional activity of IRF-3 is controlled by virus and dsRNA-induced, C-terminal phosphorylation events on serines 385 and 386, as well as the serine/threonine cluster between amino acids 396 and 405, mediated by the IKK-related kinases TBK-1 and IKK{epsilon}</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p2" name="p2" type="cso30:c:ProcessBiological">
<csml:connector id="c3" name="c3" refID="MO000007694" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="834.0" y="838.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="834.0 838.0 941.5721864729179 881.0288745891671" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="942.6863585019802 878.2434445165113 940.4580144438555 883.8143046618229 949.0 883.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c6" name="c6" refID="MO000016608" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="775.0" y="884.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="775.0 884.0 941.0021130481088 887.8161405298416" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="941.0710603494182 884.8169329228824 940.9331657467993 890.8153481368009 949.0000000000001 888.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c8" name="c8" refID="MO000022224" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="843.0" y="623.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="843.0 623.0 951.7722974352718 869.6800316835627" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="954.5172855539357 868.4696432217896 949.0273093166077 870.8904201453358 955.0 877.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c4" name="c4" refID="MO000041456" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="970.0" y="888.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="970.0 888.0 1041.0 888.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1041.0 885.0 1041.0 891.0 1049.0 888.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="949.0" y="877.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 9463386, 12692549, 9566918, 12702806
Transcriptional activity of IRF-3 is controlled by virus and dsRNA-induced, C-terminal phosphorylation events on serines 385 and 386, as well as the serine/threonine cluster between amino acids 396 and 405, mediated by the IKK-related kinases TBK-1 and IKK{epsilon}</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p3" name="p3" type="cso30:c:ProcessBiological">
<csml:connector id="c9" name="c9" refID="MO000041456" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1064.0" y="903.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1064.0 903.0 1064.0 926.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1067.0 926.0 1061.0 926.0 1064.0 934.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c10" name="c10" refID="e5" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1064.0" y="953.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1064.0 953.0 1066.4793669012352 991.0169591522734" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1069.4730072191326 990.8217217402366 1063.4857265833377 991.2121965643103 1067.0 999.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1054.0" y="934.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10017" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Dimerization" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10082512
Based on available biochemical data, a model for IRF-3 activation proposes that C-terminal phosphorylation induces a conformational change in IRF-3 that allows homo- and heterodimerization, nuclear localization, and association with the co-activator CBP/p300.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p4" name="p4" type="cso30:c:ProcessBiological">
<csml:connector id="c11" name="c11" refID="e5" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="912.9653815658512" y="1017.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1055.0 1017.0 912.9653815658512 1030.2565643871872" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="913.244169920656 1033.2435824743814 912.6865932110463 1027.269546299993 905.0 1031.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c12" name="c12" refID="e6" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="896.0" y="1041.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="896.0 1041.0 896.0 1202.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="899.0 1202.0 893.0 1202.0 896.0 1210.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="886.0" y="1022.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10027" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Translocation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10082512
Based on available biochemical data, a model for IRF-3 activation proposes that C-terminal phosphorylation induces a conformational change in IRF-3 that allows homo- and heterodimerization, nuclear localization, and association with the co-activator CBP/p300.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p5" name="p5" type="cso30:c:ProcessBiological">
<csml:connector id="c13" name="c13" refID="e6" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="908.0" y="1224.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="908.0 1224.0 946.0 1224.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="946.0 1221.0 946.0 1227.0 954.0 1224.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c15" name="c15" refID="MO000017462" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="964.0" y="1194.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="964.0 1194.0 964.0 1206.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="967.0 1206.0 961.0 1206.0 964.0 1214.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c14" name="c14" refID="e11" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="964.0" y="1233.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="964.0 1233.0 964.0 1274.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="967.0 1274.0 961.0 1274.0 964.0 1282.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="954.0" y="1214.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10082512
Based on available biochemical data, a model for IRF-3 activation proposes that C-terminal phosphorylation induces a conformational change in IRF-3 that allows homo- and heterodimerization, nuclear localization, and association with the co-activator CBP/p300.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p6" name="p6" type="cso30:c:ProcessBiological">
<csml:connector id="c16" name="c16" refID="e6" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="872.0" y="1224.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="885.0 1224.0 872.0 1224.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="872.0 1227.0 872.0 1221.0 864.0 1224.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c17" name="c17" refID="MO000019984" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="814.0" y="1224.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="814.0 1224.0 839.0 1224.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="839.0 1221.0 839.0 1227.0 847.0 1224.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c18" name="c18" refID="e12" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="832.3071142168176" y="1232.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="851.0 1232.0 832.3071142168176 1261.258429921503" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="834.835202996254 1262.8735977528095 829.7790254373812 1259.6432620901962 828.0 1268.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="847.0" y="1215.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10082512
Based on available biochemical data, a model for IRF-3 activation proposes that C-terminal phosphorylation induces a conformational change in IRF-3 that allows homo- and heterodimerization, nuclear localization, and association with the co-activator CBP/p300.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p7" name="p7" type="cso30:c:ProcessBiological">
<csml:connector id="c19" name="c19" refID="e11" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="932.8874480940947" y="1312.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="952.0 1312.0 932.8874480940947 1329.5835477534329" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="934.9186176865574 1331.7913407887183 930.856278501632 1327.3757547181474 927.0000000000001 1335.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c20" name="c20" refID="G010228" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="916.0" y="1355.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="916.0 1355.0 916.0 1416.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="919.0 1416.0 913.0 1416.0 916.0 1424.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="905.0" y="1333.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.5" height="21.5" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10805757
phosphorylation-dependent association with CBP/p300 retains IRF-3 in the nucleus and induces transcription of IFN-beta and other genes.

PMID: 17395583, 10938111
Human IFN-beta, IFN-{alpha}1, and RANTES (regulated on activation normal T cell expressed and secreted) promoters are stimulated by IRF-3 coexpression, whereas IFN-{alpha}4, -{alpha}7, and -{alpha}14 promoters are preferentially induced by IRF-7 only.

PMID: 17395583
IRF-3 possesses a restricted DNA binding site specificity and interacts with CBP.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p8" name="p8" type="cso30:c:ProcessBiological">
<csml:connector id="c21" name="c21" refID="e12" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="826.0" y="1293.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="826.0 1293.0 843.3529930415548 1326.8796530811308" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="846.0231231361308 1325.5120254717137 840.6828629469788 1328.2472806905478 847.0000000000001 1334.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c22" name="c22" refID="G010228" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="858.0" y="1353.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="858.0 1353.0 903.3937710456726 1417.459154884855" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="905.8465879638519 1415.7318190269823 900.9409541274932 1419.1864907427278 908.0 1424.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="842.0" y="1334.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10805757
phosphorylation-dependent association with CBP/p300 retains IRF-3 in the nucleus and induces transcription of IFN-beta and other genes.

PMID: 17395583, 10938111
Human IFN-beta, IFN-{alpha}1, and RANTES (regulated on activation normal T cell expressed and secreted) promoters are stimulated by IRF-3 coexpression, whereas IFN-{alpha}4, -{alpha}7, and -{alpha}14 promoters are preferentially induced by IRF-7 only.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p9" name="p9" type="cso30:c:ProcessBiological">
<csml:connector id="c23" name="c23" refID="MO000007694" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="820.0" y="846.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="820.0 846.0 820.0 958.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="823.0 958.0 817.0 958.0 820.0 966.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c24" name="c24" refID="e13" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="749.1490669328924" y="985.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="817.0 985.0 749.1490669328924 1228.2940599977712" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="752.0387944337282 1229.0999600976058 746.2593394320567 1227.4881598979366 747.0 1235.9999999999998"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="810.0" y="966.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10027" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Translocation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10805757
Inactive IRF-3 constitutively shuttles into and out of the nucleus</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p10" name="p10" type="cso30:c:ProcessBiological">
<csml:connector id="c25" name="c25" refID="e13" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="707.9019035839862" y="1100.7706346431435"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="741.0 1236.0 707.9019035839862 1100.7706346431435" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="704.9879155928073 1101.4838484871382 710.8158915751649 1100.0574207991485 706.0 1093.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c26" name="c26" refID="MO000007694" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="709.0" y="853.2664709296508"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="709.0 1074.0 810.6535989139766 853.2664709296508" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="807.9286723153575 852.011570522392 813.3785255125956 854.5213713369096 814.0 846.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="694.0" y="1074.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10084" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_NuclearExport" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10805757
Inactive IRF-3 constitutively shuttles into and out of the nucleus</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p11" name="p11" type="cso30:c:ProcessBiological">
<csml:connector id="c27" name="c27" refID="MO000007702" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="551.0" y="827.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="551.0 827.0 556.4730427271822 855.1470768826514" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="559.417888896188 854.5744679053447 553.5281965581764 855.7196858599581 558.0 863.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c29" name="c29" refID="MO000016608" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="575.9845956619939" y="872.4962178095025"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="745.0 883.0 575.9845956619939 872.4962178095025" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="575.7985139834306 875.4904411827501 576.1706773405574 869.5019944362547 568.0 872.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c28" name="c28" refID="MO000041457" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="563.0" y="880.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="563.0 880.0 600.4890180250709 993.4042795258395" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="603.3374132028811 992.4626612852411 597.6406228472607 994.3458977664379 603.0 1001.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="551.0" y="863.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 12692549, 12702806
An important breakthrough in the understanding of innate immune response signaling was the demonstration that IRF-3 and IRF-7 are the primary in vivo targets of the IKK-related kinases, TBK-1/NAK/T2K and IKK{epsilon}/IKKi.

PMID: 17395583, 15367631, 14679297
Both kinases directly phosphorylate IRF-3 and IRF-7 in their C-terminal signal-responsive domain</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p12" name="p12" type="cso30:c:ProcessBiological">
<csml:connector id="c30" name="c30" refID="MO000007702" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="563.0" y="826.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="563.0 826.0 578.0677137670099 839.632693408247" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="580.0804537389173 837.4080860708756 576.0549737951026 841.8573007456182 584.0000000000001 844.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c32" name="c32" refID="MO000019331" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="606.6936415336965" y="736.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="999.0 736.0 606.6936415336965 847.8073121628966" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="607.5158994726103 850.6924277380327 605.8713835947826 844.9221965877605 599.0 850.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c31" name="c31" refID="MO000041457" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="593.0" y="859.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="593.0 859.0 606.2150732393106 993.0385999987217" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="609.20059823979 992.7442524634631 603.2295482388313 993.3329475339801 607.0 1000.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="584.0" y="844.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="15.0" height="15.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 12692549, 12702806
An important breakthrough in the understanding of innate immune response signaling was the demonstration that IRF-3 and IRF-7 are the primary in vivo targets of the IKK-related kinases, TBK-1/NAK/T2K and IKK{epsilon}/IKKi.

PMID: 17395583, 15367631, 14679297
Both kinases directly phosphorylate IRF-3 and IRF-7 in their C-terminal signal-responsive domain</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p13" name="p13" type="cso30:c:ProcessBiological">
<csml:connector id="c36" name="c36" refID="e14" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="236.0" y="1234.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="236.0 1234.0 605.3039685569345 1338.815715213772" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="606.12307535177 1335.9297034226224 604.484861762099 1341.7017270049216 612.9999999999999 1341.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c33" name="c33" refID="G010713" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="626.0" y="1354.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="626.0 1354.0 632.8276107112843 1400.086372301169" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="635.7952210983459 1399.6467263179006 629.8600003242227 1400.5260182844374 634.0 1408.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="613.0" y="1333.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10030" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Transcription" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10924517
IFN and lipopolysaccharide treatment modulates transcription of the IRF-7 gene.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p14" name="p14" type="cso30:c:ProcessBiological">
<csml:connector id="c35" name="c35" refID="MO000016882" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="213.0" y="1144.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="213.0 1144.0 587.1194284604745 1365.918611107788" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="588.6499492950541 1363.338396780466 585.5889076258951 1368.4988254351101 594.0000000000001 1370.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c34" name="c34" refID="G010713" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="610.0" y="1385.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="610.0 1385.0 622.2448715113295 1401.5665908682695" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="624.6573999357284 1399.783417685018 619.8323430869305 1403.3497640515209 626.9999999999999 1408.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="594.0" y="1366.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10030" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Transcription" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10924517
IFN and lipopolysaccharide treatment modulates transcription of the IRF-7 gene.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p15" name="p15" type="cso30:c:ProcessBiological">
<csml:connector id="c38" name="c38" refID="e11" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="974.0" y="1317.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="974.0 1317.0 994.9081291218586 1352.1256569247223" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="997.4860077750877 1350.5912053454192 992.3302504686295 1353.6601085040254 999.0000000000001 1359.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c37" name="c37" refID="e15" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1004.0" y="1376.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1004.0 1376.0 1004.0 1438.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1007.0 1438.0 1001.0 1438.0 1004.0 1446.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="995.0" y="1359.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10938111
Human IFN-beta, IFN-{alpha}1, and RANTES (regulated on activation normal T cell expressed and secreted) promoters are stimulated by IRF-3 coexpression, whereas IFN-{alpha}4, -{alpha}7, and -{alpha}14 promoters are preferentially induced by IRF-7 only.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p16" name="p16" type="cso30:c:ProcessBiological">
<csml:connector id="c40" name="c40" refID="e11" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="976.0" y="1300.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="976.0 1300.0 1034.0082516783175 1302.6367387126509" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1034.1444746610734 1299.63983309202 1033.8720286955615 1305.6336443332816 1042.0 1303.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c39" name="c39" refID="G010522" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1052.0" y="1242.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1052.0 1294.0 1052.0 1242.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1049.0 1242.0 1055.0 1242.0 1052.0 1234.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1042.0" y="1294.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10938111
Human IFN-beta, IFN-{alpha}1, and RANTES (regulated on activation normal T cell expressed and secreted) promoters are stimulated by IRF-3 coexpression, whereas IFN-{alpha}4, -{alpha}7, and -{alpha}14 promoters are preferentially induced by IRF-7 only.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p17" name="p17" type="cso30:c:ProcessBiological">
<csml:connector id="c42" name="c42" refID="MO000041457" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="614.0" y="1031.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="614.0 1031.0 763.9429505395151 1393.6071352916376" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="766.715274805151 1392.4607417439559 761.1706262738793 1394.7535288393196 767.0000000000001 1401.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c41" name="c41" refID="e16" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="772.0" y="1422.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="772.0 1422.0 772.0 1452.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="775.0 1452.0 769.0 1452.0 772.0 1460.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="761.0" y="1401.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10938111
Human IFN-beta, IFN-{alpha}1, and RANTES (regulated on activation normal T cell expressed and secreted) promoters are stimulated by IRF-3 coexpression, whereas IFN-{alpha}4, -{alpha}7, and -{alpha}14 promoters are preferentially induced by IRF-7 only.

</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p18" name="p18" type="cso30:c:ProcessBiological">
<csml:connector id="c44" name="c44" refID="MO000041457" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="616.0" y="1031.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="616.0 1031.0 817.1468147950917 1396.9890825296059" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="819.7759088464894 1395.5441380777652 814.5177207436939 1398.4340269814463 820.9999999999999 1403.9999999999998"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c43" name="c43" refID="e17" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="828.0" y="1427.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="828.0 1427.0 828.0 1478.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="831.0 1478.0 825.0 1478.0 828.0 1486.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="816.0" y="1404.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.0" height="23.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10938111
Human IFN-beta, IFN-{alpha}1, and RANTES (regulated on activation normal T cell expressed and secreted) promoters are stimulated by IRF-3 coexpression, whereas IFN-{alpha}4, -{alpha}7, and -{alpha}14 promoters are preferentially induced by IRF-7 only.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p19" name="p19" type="cso30:c:ProcessBiological">
<csml:connector id="c46" name="c46" refID="MO000041457" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="612.0" y="1031.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="612.0 1031.0 700.1744694176854 1407.2110695154577" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="703.0953183493888 1406.5264955470898 697.253620485982 1407.8956434838258 702.0 1415.0000000000002"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c45" name="c45" refID="e18" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="702.1927151438009" y="1432.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="704.0 1432.0 702.1927151438009 1507.00232153226" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="705.1918445692033 1507.0745897111856 699.1935857183985 1506.9300533533349 701.9999999999999 1515.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="695.0" y="1415.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 10938111
Human IFN-beta, IFN-{alpha}1, and RANTES (regulated on activation normal T cell expressed and secreted) promoters are stimulated by IRF-3 coexpression, whereas IFN-{alpha}4, -{alpha}7, and -{alpha}14 promoters are preferentially induced by IRF-7 only.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p20" name="p20" type="cso30:c:ProcessBiological">
<csml:connector id="c47" name="c47" refID="MO000007694" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="766.178496632733" y="744.8220353187476"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="811.0 818.0 766.178496632733 744.8220353187476" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="763.6202333882026 746.3889715560224 768.7367598772632 743.2550990814727 762.0 738.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c48" name="c48" refID="e19" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="666.0" y="728.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="666.0 728.0 738.0 728.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="738.0 725.0 738.0 731.0 746.0 728.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c49" name="c49" refID="e20" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="756.0" y="606.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="756.0 719.0 756.0 606.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="753.0 606.0 759.0 606.0 756.0 598.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="746.0" y="718.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.5" height="19.5" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 17015689
IRF-3 is recruited to Cullin1 following virus infection, and expression of a dominant-negative Cullin1 inhibits IRF-3 degradation.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p21" name="p21" type="cso30:c:ProcessBiological">
<csml:connector id="c50" name="c50" refID="e20" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="703.0" y="584.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="744.0 584.0 703.0 584.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="703.0 587.0 703.0 581.0 695.0 584.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c51" name="c51" refID="e21" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="590.0" y="584.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="672.0 584.0 590.0 584.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="590.0 587.0 590.0 581.0 582.0 584.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="672.0" y="572.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.0" height="23.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10033" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Ubiquitination" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 17015689, 9566918
IRF-3 is targeted for proteasomal degradation (9) following virus infection, and polyubiquitination is required for IRF-3 degradation.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p22" name="p22" type="cso30:c:ProcessBiological">
<csml:connector id="c52" name="c52" refID="e21" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="544.4057970281387" y="596.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="561.0 596.0 544.4057970281387 614.102766878394" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="546.6172594487409 616.1299407639461 542.1943346075365 612.0755929928421 538.9999999999999 620.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c53" name="c53" refID="e19" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="539.0" y="640.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="539.0 640.0 631.6851822609893 712.0884750918806" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="633.5270041015341 709.7204184397516 629.8433604204446 714.4565317440096 637.9999999999999 716.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c54" name="c54" refID="MO000019479" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="473.9586826857845" y="643.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="516.0 643.0 473.9586826857845 680.6620134273181" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="475.9604276505402 682.8965194344873 471.9569377210288 678.427507420149 468.00000000000006 686.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="516.0" y="620.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.0" height="23.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10089" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_ProteasomeDegradation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p23" name="p23" type="cso30:c:ProcessBiological">
<csml:connector id="c55" name="c55" refID="MO000041456" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1079.0" y="888.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1079.0 888.0 1121.0 888.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1121.0 885.0 1121.0 891.0 1129.0 888.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c56" name="c56" refID="MO000017197" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1160.0" y="888.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1243.0 888.0 1160.0 888.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1160.0 891.0 1160.0 885.0 1152.0 888.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c57" name="c57" refID="e22" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1140.0" y="899.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1140.0 899.0 1140.0 932.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1143.0 932.0 1137.0 932.0 1140.0 940.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1129.0" y="876.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.5" height="22.5" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
After stimulation by dsRNA, phosphorylation of the Ser339&#8211;Pro340 motif of IRF-3 results in the interaction with Pin1, polyubiquitination, and then proteasome-dependent degradation of IRF-3</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p24" name="p24" type="cso30:c:ProcessBiological">
<csml:connector id="c58" name="c58" refID="e22" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1140.0" y="972.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1140.0 972.0 1140.0 999.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1143.0 999.0 1137.0 999.0 1140.0 1007.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c66" name="c66" refID="e24" type="cso30:c:InputInhibitor">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1145.7754422713235" y="793.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:inhibitoryConnector name="default" depth="0" points="1250.0 793.0 1145.7754422713235 1003.4156165465735" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<bioInhibitoryConnectorArrow size="4.0 14.0" pointsInAbsoluteCoordinate="1152.04811331482 1006.5226405213895 1139.5027712278272 1000.3085925717575 1137.7273289565037 1003.892976025184 1150.2726710434965 1010.107023974816"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c59" name="c59" refID="e23" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1140.0" y="1024.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1140.0 1024.0 1140.0 1050.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1143.0 1050.0 1137.0 1050.0 1140.0 1058.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1131.0" y="1007.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10033" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Ubiquitination" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
After stimulation by dsRNA, phosphorylation of the Ser339&#8211;Pro340 motif of IRF-3 results in the interaction with Pin1, polyubiquitination, and then proteasome-dependent degradation of IRF-3

PMID: 17395583
ISGylation subverts ubiquitin-mediated degradation of IRF-3 and enhances IRF-3-dependent gene activity
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p25" name="p25" type="cso30:c:ProcessBiological">
<csml:connector id="c60" name="c60" refID="e23" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1051.9947793925485" y="1073.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1127.0 1073.0 1051.9947793925485 1075.7110320701488" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1052.1031423662428 1078.7090743423544 1051.8864164188544 1072.712989797943 1044.0000000000002 1075.9999999999998"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c61" name="c61" refID="MO000019479" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="474.72590718468217" y="714.3315323550726"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1027.0 1070.0 474.72590718468217 714.3315323550726" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="473.10158255152993 716.8537475493284 476.35023181783436 711.8093171608168 468.0 710.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c62" name="c62" refID="MO000017197" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1044.0" y="904.1962549665959"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1044.0 1069.0 1236.9173250685142 904.1962549665959" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1234.9687294560406 901.9152518672887 1238.8659206809875 906.4772580659031 1243.0 898.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1027.0" y="1067.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10089" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_ProteasomeDegradation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
After stimulation by dsRNA, phosphorylation of the Ser339&#8211;Pro340 motif of IRF-3 results in the interaction with Pin1, polyubiquitination, and then proteasome-dependent degradation of IRF-3
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p26" name="p26" type="cso30:c:ProcessBiological">
<csml:connector id="c63" name="c63" refID="MO000069094" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1132.5777087639997" y="720.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1154.0 720.0 1132.5777087639997 762.8445824720006" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1135.2609903369994 764.1862232585005 1129.894427191 761.5029416855008 1129.0 770.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c64" name="c64" refID="MO000041456" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1072.0" y="795.9814649373426"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1072.0 873.0 1115.0937041422012 795.9814649373426" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1112.4756547906977 794.516603990668 1117.7117534937047 797.4463258840171 1119.0 789.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c65" name="c65" refID="e24" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1133.0" y="780.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1133.0 780.0 1236.0 780.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1236.0 777.0 1236.0 783.0 1244.0 780.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1114.0" y="770.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
IRF-3 can also be stabilized in infected cells; both IFN treatment and RNA virus infection increase conjugation of the IFN-induced, ubiquitin-like protein ISG15 to IRF-3.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p27" name="p27" type="cso30:c:ProcessBiological">
<csml:connector id="c67" name="c67" refID="MO000022224" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="840.0" y="555.6388542106463"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="840.0 593.0 851.6234675789101 555.6388542106463" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="848.7588972499177 554.7476545527376 854.4880379079024 556.530053868555 854.0 548.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c68" name="c68" refID="MO000066987" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="856.0" y="510.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="856.0 510.0 856.0 523.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="859.0 523.0 853.0 523.0 856.0 531.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c69" name="c69" refID="e25" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="864.0" y="540.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="864.0 540.0 965.0053813173499 543.7066194978844" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="965.1153990056433 540.7086374918906 964.8953636290566 546.7046015038782 973.0000000000001 544.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="847.0" y="531.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 15208624, 15563593
Antiviral immune responses can be triggered by dsRNA and the 5'-triphosphate RNA structure of viral nucleic acids.These structures are "sensed" by the cytoplasmic RNA helicase proteins RIG-I and MDA5</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p28" name="p28" type="cso30:c:ProcessBiological">
<csml:connector id="c70" name="c70" refID="MO000022224" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="809.7055898093053" y="536.5285977302406"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="830.0 593.0 809.7055898093053 536.5285977302406" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="806.882365660465 537.54319390873 812.5288139581454 535.5140015517511 807.0 529.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c71" name="c71" refID="MO000103999" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="804.0" y="461.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="804.0 461.0 804.0 502.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="807.0 502.0 801.0 502.0 804.0 510.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c72" name="c72" refID="e26" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="717.7824497174829" y="499.85296421844834"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="794.0 518.0 717.7824497174829 499.85296421844834" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="717.0875881355648 502.7713828625044 718.4773112994011 496.93454557439225 710.0 498.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="794.0" y="510.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 15208624, 15563593
Antiviral immune responses can be triggered by dsRNA and the 5'-triphosphate RNA structure of viral nucleic acids.These structures are "sensed" by the cytoplasmic RNA helicase proteins RIG-I and MDA5</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p29" name="p29" type="cso30:c:ProcessBiological">
<csml:connector id="c73" name="c73" refID="e25" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="988.0" y="504.71811056990185"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="988.0 530.0 994.8950607536631 504.71811056990185" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="992.0007692899499 503.9287583525255 997.7893522173763 505.50746278727814 996.9999999999999 497.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c74" name="c74" refID="MO000094908" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="960.0" y="421.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="960.0 421.0 989.9542440023006 472.09841623921875" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="992.5423379125936 470.58125774008147 987.3661500920076 473.615574738356 993.9999999999999 479.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c75" name="c75" refID="e27" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="953.9921104517297" y="489.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="991.0 489.0 953.9921104517297 490.6447950910342" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="954.1253122925918 493.6418365104328 953.8589086108675 487.6477536716356 946.0 490.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="991.0" y="478.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="18.5" height="18.5" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 16177806, 16153868, 16125763, 16127453, 15563593
The protein responsible for downstream signaling is a mitochondrial adapter, known as MAVS/IPS-1/ VISA/Cardif that interacts with RIG-I via CARD domain interactions.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p30" name="p30" type="cso30:c:ProcessBiological">
<csml:connector id="c76" name="c76" refID="e26" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="709.0" y="424.46988867442553"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="709.0 484.0 752.2946264185996 424.46988867442553" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="749.8684181656901 422.7053735814004 754.7208346715092 426.23440376745066 757.0 418.00000000000006"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c77" name="c77" refID="MO000094908" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="782.0" y="408.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="939.0 408.0 782.0 408.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="782.0 411.0 782.0 405.0 774.0 408.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c78" name="c78" refID="e28" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="697.7824497174829" y="391.85296421844834"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="753.0 405.0 697.7824497174829 391.85296421844834" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="697.0875881355648 394.7713828625044 698.4773112994011 388.93454557439225 690.0 390.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="753.0" y="397.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 16177806, 16153868, 16125763, 16127453, 15563593
The protein responsible for downstream signaling is a mitochondrial adapter, known as MAVS/IPS-1/ VISA/Cardif that interacts with RIG-I via CARD domain interactions.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p31" name="p31" type="cso30:c:ProcessBiological">
<csml:connector id="c79" name="c79" refID="MO000066987" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="860.0" y="510.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="860.0 510.0 878.6073133740373 569.3661902885951" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="881.4699920158141 568.4689328038592 875.7446347322605 570.2634477733312 881.0 577.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c80" name="c80" refID="e29" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="884.0" y="606.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="884.0 623.0 884.0 606.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="881.0 606.0 887.0 606.0 884.0 598.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c81" name="c81" refID="e30" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="894.0" y="588.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="894.0 588.0 975.0 588.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="975.0 585.0 975.0 591.0 983.0 588.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="873.0" y="577.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583, 17190814
LGP2 was shown to interact directly with RIG-I to block RIG-I dimerization and downstream signaling to the IFN response.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p32" name="p32" type="cso30:c:ProcessBiological">
<csml:connector id="c82" name="c82" refID="MO000016963" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="900.0" y="348.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="900.0 348.0 982.0078895482703 351.6447950910342" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="982.1410913891325 348.6477536716356 981.8746877074082 354.6418365104328 990.0 352.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c83" name="c83" refID="e27" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="942.0" y="368.2636750760036"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="942.0 478.0 992.647534580306 368.2636750760036" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="989.9236564268047 367.00650054361836 995.3714127338073 369.52084960838886 996.0 361.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c84" name="c84" refID="e31" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1009.0" y="352.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1009.0 352.0 1048.0 352.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1048.0 349.0 1048.0 355.0 1056.0 352.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="990.0" y="342.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
MAVS links RIG-I and MDA5 to TRAF3.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p33" name="p33" type="cso30:c:ProcessBiological">
<csml:connector id="c85" name="c85" refID="e28" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="690.0" y="361.86745234925706"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="690.0 380.0 713.6511491096646 361.86745234925706" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="711.8258544786933 359.48663326538133 715.4764437406361 364.2482714331328 720.0 357.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c86" name="c86" refID="MO000016963" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="751.0" y="348.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="875.0 348.0 751.0 348.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="751.0 351.0 751.0 345.0 743.0 348.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c87" name="c87" refID="e32" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="575.0" y="348.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="720.0 348.0 575.0 348.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="575.0 351.0 575.0 345.0 567.0 348.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="720.0" y="336.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.0" height="23.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
MAVS links RIG-I and MDA5 to TRAF3.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p34" name="p34" type="cso30:c:ProcessBiological">
<csml:connector id="c88" name="c88" refID="MO000016608" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="765.0" y="740.6168067448987"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="765.0 870.0 806.5537263009085 740.6168067448987" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="803.6974237715715 739.6994541077394 809.4100288302454 741.534159382058 809.0 733.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c89" name="c89" refID="e31" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="823.4855296281586" y="364.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1056.0 364.0 823.4855296281586 707.3758001271918" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="825.9696045804616 709.0578737377514 821.0014546758555 705.6937265166324 818.9999999999999 714.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c90" name="c90" refID="e33" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="821.0" y="630.7794882227096"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="821.0 721.0 1064.4983704956976 630.7794882227096" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1063.4560624121814 627.9663771585962 1065.5406785792136 633.5925992868229 1071.9999999999998 627.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="802.0" y="714.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
TRAF-dependent induction of the kinases JNK, IKK{alpha}, IKKbeta, IKK{epsilon}, TBK-1, and IRAK1 induce the binding of ATF2-c-Jun, NF-{kappa}B (p50-p65 complex), IRF-3, and IRF-7 to sequence-specific PRDs located in the IFN-beta enhancer.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p35" name="p35" type="cso30:c:ProcessBiological">
<csml:connector id="c91" name="c91" refID="MO000000023" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1146.0" y="672.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1146.0 672.0 1298.2987924787687 714.8340353846537" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1299.1110292095236 711.946082564192 1297.4865557480139 717.7219882051154 1306.0 717.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c93" name="c93" refID="e33" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1095.0" y="629.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1095.0 629.0 1298.604027910518 712.9504759631046" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1299.7475994243537 710.1769864295488 1297.460456396682 715.7239654966603 1306.0 716.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c92" name="c92" refID="e34" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1233.9943809256733" y="720.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1306.0 720.0 1233.9943809256733 722.7002107152872" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1234.1068019074405 725.6981035624148 1233.881959943906 719.7023178681596 1225.9999999999998 723.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1306.0" y="710.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
TRAF-dependent induction of the kinases JNK, IKK{alpha}, IKKbeta, IKK{epsilon}, TBK-1, and IRAK1 induce the binding of ATF2-c-Jun, NF-{kappa}B (p50-p65 complex), IRF-3, and IRF-7 to sequence-specific PRDs located in the IFN-beta enhancer.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p36" name="p36" type="cso30:c:ProcessBiological">
<csml:connector id="c94" name="c94" refID="MO000000248" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1282.6996903666366" y="982.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1299.0 982.0 1282.6996903666366 1027.469284766751" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1285.523708579105 1028.4816686542395 1279.8756721541681 1026.456900879262 1280.0 1035.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c96" name="c96" refID="e33" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1093.0" y="643.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1093.0 643.0 1268.676993280605 1027.7228009273583" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1271.4059429328456 1026.4766734075852 1265.9480436283645 1028.9689284471315 1272.0 1035.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c95" name="c95" refID="e35" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1276.0" y="1053.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1276.0 1053.0 1276.0 1090.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1279.0 1090.0 1273.0 1090.0 1276.0 1098.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1267.0" y="1034.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="18.5" height="18.5" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
TRAF-dependent induction of the kinases JNK, IKK{alpha}, IKKbeta, IKK{epsilon}, TBK-1, and IRAK1 induce the binding of ATF2-c-Jun, NF-{kappa}B (p50-p65 complex), IRF-3, and IRF-7 to sequence-specific PRDs located in the IFN-beta enhancer.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p37" name="p37" type="cso30:c:ProcessBiological">
<csml:connector id="c97" name="c97" refID="e36" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="981.0" y="676.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="981.0 676.0 1027.0 676.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1027.0 673.0 1027.0 679.0 1035.0 676.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c99" name="c99" refID="e33" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1055.9115249081194" y="640.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1072.0 640.0 1055.9115249081194 660.6851822609893" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1058.2795815602483 662.5270041015341 1053.5434682559903 658.8433604204446 1051.0 666.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c98" name="c98" refID="MO000019331" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1022.9691115068547" y="684.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1039.0 684.0 1022.9691115068547 712.0540548630044" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1025.573840933228 713.5424716780749 1020.3643820804813 710.5656380479339 1018.9999999999999 719.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1035.0" y="667.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
TRAF-dependent induction of the kinases JNK, IKK{alpha}, IKKbeta, IKK{epsilon}, TBK-1, and IRAK1 induce the binding of ATF2-c-Jun, NF-{kappa}B (p50-p65 complex), IRF-3, and IRF-7 to sequence-specific PRDs located in the IFN-beta enhancer.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p38" name="p38" type="cso30:c:ProcessBiological">
<csml:connector id="c100" name="c100" refID="MO000055971" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="459.0" y="1373.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="459.0 1373.0 485.76678453654733 1403.9490946203828" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="488.03587405390374 1401.986638821588 483.49769501919087 1405.9115504191775 491.0 1410.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c102" name="c102" refID="e34" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="514.7229128767959" y="738.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1198.0 738.0 514.7229128767959 1405.4099849548859" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="516.8191685187138 1407.5560772836843 512.6266572348782 1403.2638926260875 509.00000000000006 1411.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c101" name="c101" refID="e37" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="500.0" y="1429.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="500.0 1429.0 500.0 1467.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="503.0 1467.0 497.0 1467.0 500.0 1475.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="490.0" y="1410.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
TRAF-dependent induction of the kinases JNK, IKK{alpha}, IKKbeta, IKK{epsilon}, TBK-1, and IRAK1 induce the binding of ATF2-c-Jun, NF-{kappa}B (p50-p65 complex), IRF-3, and IRF-7 to sequence-specific PRDs located in the IFN-beta enhancer.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p39" name="p39" type="cso30:c:ProcessBiological">
<csml:connector id="c103" name="c103" refID="e38" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1250.0" y="1196.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1250.0 1196.0 1292.01538394778 1248.7427160195537" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1294.3618654404474 1246.8734849999712 1289.6689024551126 1250.611947039136 1297.0 1255.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c105" name="c105" refID="e35" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1279.0" y="1126.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1279.0 1126.0 1300.5957880150145 1247.1242023450814" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1303.549212135609 1246.5976228507118 1297.64236389442 1247.650781839451 1302.0 1255.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c104" name="c104" refID="e39" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1304.0" y="1272.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1304.0 1272.0 1304.0 1308.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1307.0 1308.0 1301.0 1308.0 1304.0 1316.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1295.0" y="1255.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
TRAF-dependent induction of the kinases JNK, IKK{alpha}, IKKbeta, IKK{epsilon}, TBK-1, and IRAK1 induce the binding of ATF2-c-Jun, NF-{kappa}B (p50-p65 complex), IRF-3, and IRF-7 to sequence-specific PRDs located in the IFN-beta enhancer.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p40" name="p40" type="cso30:c:ProcessBiological">
<csml:connector id="c106" name="c106" refID="e40" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="678.0" y="1580.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="678.0 1580.0 751.0 1580.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="751.0 1577.0 751.0 1583.0 759.0 1580.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c108" name="c108" refID="e39" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="783.2595358144902" y="1338.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1290.0 1338.0 783.2595358144902 1572.6385806929015" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="784.5200680546521 1575.3609066233353 781.9990035743282 1569.9162547624676 776.0 1576.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c109" name="c109" refID="e37" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="513.0" y="1492.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="513.0 1492.0 751.438650849597 1574.3873387081942" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="752.4183988340243 1571.5518327767932 750.4589028651699 1577.2228446395955 759.0 1577.0000000000002"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c110" name="c110" refID="e13" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="745.0" y="1260.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="745.0 1260.0 766.4354942557864 1563.0199415249792" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="769.4280161839191 1562.808251870899 763.4429723276536 1563.2316311790594 767.0 1571.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c111" name="c111" refID="MO000041457" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="612.0" y="1031.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="612.0 1031.0 762.8191794203518 1563.302986189477" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="765.705559599298 1562.4851784721088 759.9327992414057 1564.120793906845 765.0 1571.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c107" name="c107" refID="e41" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="776.0" y="1580.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="776.0 1580.0 838.0 1580.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="838.0 1577.0 838.0 1583.0 846.0 1580.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="759.0" y="1571.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10128" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_DNABinding" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
TRAF-dependent induction of the kinases JNK, IKK{alpha}, IKKbeta, IKK{epsilon}, TBK-1, and IRAK1 induce the binding of ATF2-c-Jun, NF-{kappa}B (p50-p65 complex), IRF-3, and IRF-7 to sequence-specific PRDs located in the IFN-beta enhancer.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p41" name="p41" type="cso30:c:ProcessBiological">
<csml:connector id="c112" name="c112" refID="e41" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="882.0" y="1539.6615021863595"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="882.0 1573.0 928.49843116113 1539.6615021863595" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="926.7503678412452 1537.2234138717834 930.2464944810149 1542.0995905009358 935.0 1535.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c113" name="c113" refID="G010228" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="922.2690275348773" y="1455.67147404649"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="941.0 1519.0 922.2690275348773 1455.67147404649" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="919.3922247674436 1456.5223593720689 925.1458303023111 1454.8205887209108 920.0 1448.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="935.0" y="1518.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="18.5" height="18.5" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10030" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Transcription" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
Coordinated assembly of these factors forms the IFN-beta enhanceosome, which is responsible for the transcriptional induction of this antiviral cytokine.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p42" name="p42" type="cso30:c:ProcessBiological">
<csml:connector id="c114" name="c114" refID="MO000019398" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="355.0" y="608.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="355.0 608.0 403.0 608.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="403.0 605.0 403.0 611.0 411.0 608.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c115" name="c115" refID="MO000022224" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="436.0" y="608.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="821.0 608.0 436.0 608.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="436.0 611.0 436.0 605.0 428.0 608.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c116" name="c116" refID="MO000041446" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="352.06086952369344" y="616.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="411.0 616.0 352.06086952369344 666.7783277949718" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="354.018996600579 669.0511538663568 350.10274244680784 664.5055017235867 346.0 672.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="411.0" y="599.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
Viral pathogen-associated molecular patterns trigger multiple signaling cascades through Toll-like receptor-dependent (TLR-3, TLR-7, and TLR-9) and -independent (RIG-I and MDA5) pathways leading to kinase activation through TRAF family members.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p43" name="p43" type="cso30:c:ProcessBiological">
<csml:connector id="c117" name="c117" refID="MO000041446" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="346.0" y="695.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="346.0 695.0 392.7300329878999 732.0313468960717" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="394.593277901873 729.6801092665341 390.8667880739267 734.3825845256092 398.99999999999994 737.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c119" name="c119" refID="MO000041125" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="424.0" y="744.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="451.0 744.0 424.0 744.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="424.0 747.0 424.0 741.0 416.0 744.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c118" name="c118" refID="MO000041437" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="360.85994340570034" y="749.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="399.0 749.0 360.85994340570034 771.8840339565797" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="362.4034306719829 774.4565127337173 359.31645613941777 769.311555179442 353.99999999999994 775.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="399.0" y="735.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
Viral pathogen-associated molecular patterns trigger multiple signaling cascades through Toll-like receptor-dependent (TLR-3, TLR-7, and TLR-9) and -independent (RIG-I and MDA5) pathways leading to kinase activation through TRAF family members.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p44" name="p44" type="cso30:c:ProcessBiological">
<csml:connector id="c120" name="c120" refID="MO000041437" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="272.8093669577919" y="793.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="326.0 793.0 272.8093669577919 825.8008903760283" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="274.3840330667813 828.3544029852003 271.2347008488025 823.2473777668564 266.0 830.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c121" name="c121" refID="MO000000212" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="267.09651633853315" y="461.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="480.0 461.0 267.09651633853315 818.1284242063315" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="269.67335726115886 819.6646178332815 264.5196754159075 816.5922305793816 263.0 825.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c122" name="c122" refID="e42" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="266.0" y="843.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="266.0 843.0 324.56453386431724 886.2476557767266" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="326.34666294804475 883.8343559758455 322.7824047805897 888.6609555776075 331.0 891.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="245.0" y="825.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
Viral pathogen-associated molecular patterns trigger multiple signaling cascades through Toll-like receptor-dependent (TLR-3, TLR-7, and TLR-9) and -independent (RIG-I and MDA5) pathways leading to kinase activation through TRAF family members.

</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p45" name="p45" type="cso30:c:ProcessBiological">
<csml:connector id="c123" name="c123" refID="MO000041437" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="268.27434391436293" y="798.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="331.0 798.0 268.27434391436293 897.2376051504109" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="270.8102419829588 898.840484118297 265.738445845767 895.6347261825248 264.0 904.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c124" name="c124" refID="MO000016963" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="272.9521910482008" y="360.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="875.0 360.0 272.9521910482008 900.6547758021092" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="274.9566501224099 902.8868474451845 270.9477319739917 898.4227041590339 267.0 906.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c125" name="c125" refID="e43" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="267.0" y="922.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="267.0 922.0 324.1211620492741 955.9156899667565" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="325.6527783117404 953.3361257352343 322.5895457868078 958.4952541982788 331.0 960.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="244.0" y="904.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.0" height="23.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Extracellular">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
Viral pathogen-associated molecular patterns trigger multiple signaling cascades through Toll-like receptor-dependent (TLR-3, TLR-7, and TLR-9) and -independent (RIG-I and MDA5) pathways leading to kinase activation through TRAF family members.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p46" name="p46" type="cso30:c:ProcessBiological">
<csml:connector id="c126" name="c126" refID="e36" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="981.0" y="683.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="981.0 683.0 1058.8954353411784 723.3223430001394" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1060.2745567161262 720.6581312530814 1057.5163139662307 725.9865547471975 1066.0 727.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c128" name="c128" refID="e43" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="358.0" y="737.4619897851987"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="358.0 964.0 1058.3882586553682 737.4619897851987" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1057.4650124859186 734.6075867809618 1059.3115048248176 740.3163927894357 1066.0 735.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c127" name="c127" refID="MO000019331" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1033.0" y="732.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1066.0 732.0 1033.0 732.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1033.0 735.0 1033.0 729.0 1025.0 732.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1066.0" y="722.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
Viral pathogen-associated molecular patterns trigger multiple signaling cascades through Toll-like receptor-dependent (TLR-3, TLR-7, and TLR-9) and -independent (RIG-I and MDA5) pathways leading to kinase activation through TRAF family members.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p47" name="p47" type="cso30:c:ProcessBiological">
<csml:connector id="c129" name="c129" refID="MO000000248" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1234.2273043158027" y="979.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1290.0 979.0 1234.2273043158027 1023.9779803904818" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1236.1105616693721 1026.3132195089079 1232.3440469622335 1021.6427412720559 1228.0000000000002 1029.0000000000002"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c131" name="c131" refID="e42" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="357.0" y="902.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="357.0 902.0 1203.095287056638 1033.7689381481648" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1203.556935251076 1030.804670794404 1202.6336388621999 1036.7332055019256 1211.0 1035.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c130" name="c130" refID="e35" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1226.0" y="1044.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1226.0 1044.0 1261.238179594994 1091.571542453242" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1263.6488511750283 1089.7858598013647 1258.82750801496 1093.3572251051191 1266.0 1098.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1211.0" y="1027.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
Viral pathogen-associated molecular patterns trigger multiple signaling cascades through Toll-like receptor-dependent (TLR-3, TLR-7, and TLR-9) and -independent (RIG-I and MDA5) pathways leading to kinase activation through TRAF family members.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p48" name="p48" type="cso30:c:ProcessBiological">
<csml:connector id="c132" name="c132" refID="MO000042126" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1239.0" y="368.9771443289089"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1239.0 403.0 1258.085992205734 368.9771443289089" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1255.4695630823933 367.50939140605914 1260.702421329075 370.4448972517586 1262.0 362.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c133" name="c133" refID="MO000022224" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="851.0" y="363.0709773902161"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="851.0 599.0 1250.1132632482177 363.0709773902161" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1248.5866467268866 360.48845110829774 1251.6398797695488 365.65350367213443 1257.0 358.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c134" name="c134" refID="e47" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1262.8834522085988" y="362.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1267.0 362.0 1262.8834522085988 399.04893012261107" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1265.8651034126196 399.3802247008356 1259.901801004578 398.7176355443865 1262.0 407.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1257.0" y="341.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
In plasmacytoid dendritic cells, TLR-7 or TLR-9 engagement leads to direct activation of IRF-7 through MyD88/TRAF6/IRAK4/IRAK1 recruitment.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p49" name="p49" type="cso30:c:ProcessBiological">
<csml:connector id="c135" name="c135" refID="MO000042012" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1266.1070902829529" y="466.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1273.0 466.0 1266.1070902829529 471.8324620682706" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1268.0449170073514 474.12262092437794 1264.1692635585543 469.54230321216323 1260.0 477.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c136" name="c136" refID="MO000022224" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="851.0" y="489.28801621390073"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="851.0 604.0 1235.3341678987258 489.28801621390073" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1234.476161818513 486.41332917592285 1236.1921739789386 492.16270325187855 1243.0 486.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c137" name="c137" refID="e48" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1260.0" y="488.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1260.0 488.0 1273.6468397598555 493.84864561136663" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1274.828597655593 491.09121052131246 1272.465081864118 496.6060807014208 1281.0 497.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1243.0" y="475.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
In plasmacytoid dendritic cells, TLR-7 or TLR-9 engagement leads to direct activation of IRF-7 through MyD88/TRAF6/IRAK4/IRAK1 recruitment.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p50" name="p50" type="cso30:c:ProcessBiological">
<csml:connector id="c138" name="c138" refID="MO000016573" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1328.0" y="405.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1328.0 405.0 1445.500773503154 489.3352325950058" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1447.2500612800268 486.89802265868855 1443.751485726281 491.77244253132295 1451.9999999999998 493.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c139" name="c139" refID="e48" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1295.0" y="500.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1295.0 500.0 1444.0 500.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1444.0 497.0 1444.0 503.0 1452.0 500.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c140" name="c140" refID="e49" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1301.8685578522307" y="501.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1452.0 501.0 1301.8685578522307 528.5557710271222" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1302.4101437170598 531.5064802217087 1301.3269719874015 525.6050618325357 1294.0 530.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1452.0" y="492.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="15.5" height="15.5" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
In plasmacytoid dendritic cells, TLR-7 or TLR-9 engagement leads to direct activation of IRF-7 through MyD88/TRAF6/IRAK4/IRAK1 recruitment.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p51" name="p51" type="cso30:c:ProcessBiological">
<csml:connector id="c141" name="c141" refID="e49" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1294.0" y="542.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1294.0 542.0 1310.3431457505076 558.3431457505076" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1312.4644660940671 556.2218254069479 1308.2218254069478 560.4644660940672 1315.9999999999998 563.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c143" name="c143" refID="MO000039077" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1324.0" y="587.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1324.0 605.0 1324.0 587.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1321.0 587.0 1327.0 587.0 1324.0 579.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c142" name="c142" refID="e63" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1291.984420627863" y="569.4990262892414"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1316.0 571.0 1291.984420627863 569.4990262892414" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1291.7972857693976 572.4931840246901 1292.1715554863288 566.5048685537928 1284.0 569.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1316.0" y="564.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="15.0" height="15.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
In plasmacytoid dendritic cells, TLR-7 or TLR-9 engagement leads to direct activation of IRF-7 through MyD88/TRAF6/IRAK4/IRAK1 recruitment.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p52" name="p52" type="cso30:c:ProcessBiological">
<csml:connector id="c144" name="c144" refID="e63" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1279.0" y="581.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1279.0 581.0 1292.4509357448267 649.1514077737887" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1295.3941578296558 648.5705086780987 1289.5077136599973 649.7323068694786 1293.9999999999998 657.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c145" name="c145" refID="e64" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1251.0" y="644.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1251.0 644.0 1277.9296966692234 658.2568982366478" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1279.3333598304805 655.6055344876066 1276.5260335079663 660.908261985689 1285.0 662.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c146" name="c146" refID="e65" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1263.506694597132" y="619.6098187424603"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1289.0 657.0 1263.506694597132 619.6098187424603" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1261.0280125687095 621.2998292163849 1265.9853766255549 617.9198082685358 1259.0 613.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1285.0" y="657.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Extracellular">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
In plasmacytoid dendritic cells, TLR-7 or TLR-9 engagement leads to direct activation of IRF-7 through MyD88/TRAF6/IRAK4/IRAK1 recruitment.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p53" name="p53" type="cso30:c:ProcessBiological">
<csml:connector id="c147" name="c147" refID="e65" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1016.9999592173666" y="188.02554448023616"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1244.0 577.0 1163.9459426898532 188.4947542185119 1016.9999592173666 188.02554448023616" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1016.9903800372781 191.02552918674866 1017.0095383974552 185.02555977372367 1009.0 188.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c148" name="c148" refID="MO000000212" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="501.0" y="196.6185045325348"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="501.0 441.0 982.86512614351 196.6185045325348" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="981.5081869438094 193.94292683635106 984.2220653432105 199.2940822287186 990.0 193.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c149" name="c149" refID="e66" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1004.0" y="197.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1004.0 197.0 1196.4940207058628 591.8091649171267" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1199.1905838619402 590.4944226818253 1193.7974575497853 593.1239071524283 1200.0 599.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="990.0" y="178.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
In plasmacytoid dendritic cells, TLR-7 or TLR-9 engagement leads to direct activation of IRF-7 through MyD88/TRAF6/IRAK4/IRAK1 recruitment.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p54" name="p54" type="cso30:c:ProcessBiological">
<csml:connector id="c150" name="c150" refID="MO000007702" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="447.07841912241383" y="827.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="539.0 827.0 447.07841912241383 982.1176677309267" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="449.65929372331635 983.6470749018318 444.4975445215113 980.5882605600215 442.99999999999994 989.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c152" name="c152" refID="e66" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="453.1630215331574" y="621.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1198.0 621.0 453.1630215331574 991.4375398226052" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="454.49894409968044 994.1236728975392 451.82709896663437 988.7514067476711 446.0 995.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c151" name="c151" refID="e67" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="436.0" y="1010.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="436.0 1010.0 436.0 1097.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="439.0 1097.0 433.0 1097.0 436.0 1105.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="425.0" y="989.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
In plasmacytoid dendritic cells, TLR-7 or TLR-9 engagement leads to direct activation of IRF-7 through MyD88/TRAF6/IRAK4/IRAK1 recruitment.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p55" name="p55" type="cso30:c:ProcessBiological">
<csml:connector id="c153" name="c153" refID="MO000007702" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="495.8364087048146" y="827.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="544.0 827.0 495.8364087048146 1031.2136270915862" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="498.75629854546975 1031.9022803558917 492.91651886415934 1030.5249738272807 493.99999999999994 1039.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c166" name="c166" refID="e71" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="506.29482733884726" y="522.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1163.0 522.0 506.29482733884726 1037.062880518551" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="508.14624714439054 1039.4234407706188 504.4434075333039 1034.7023202664834 500.0 1041.9999999999998"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">
indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c154" name="c154" refID="e67" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="452.90258815435106" y="1056.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="486.0 1056.0 452.90258815435106 1098.678241590442" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="455.2732475579353 1100.5167121483237 450.53192875076684 1096.8397710325603 448.0 1105.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="483.0" y="1039.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
In plasmacytoid dendritic cells, TLR-7 or TLR-9 engagement leads to direct activation of IRF-7 through MyD88/TRAF6/IRAK4/IRAK1 recruitment.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p56" name="p56" type="cso30:c:ProcessBiological">
<csml:connector id="c155" name="c155" refID="e47" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1151.3342580445078" y="343.88642763433455"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1250.0 420.0 1151.3342580445078 343.88642763433455" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1149.5018476816324 346.261774401025 1153.1666684073834 341.5110808676441 1145.0 339.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c156" name="c156" refID="MO000016573" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1152.530715233249" y="337.69969036663645"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1304.0 392.0 1152.530715233249 337.69969036663645" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1151.5183313457605 340.5237085791049 1153.543099120738 334.87567215416806 1145.0 335.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c157" name="c157" refID="e68" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1140.0" y="341.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1140.0 341.0 1168.5521690086002 400.7811038617568" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1171.2592550604415 399.48816723998186 1165.8450829567591 402.0740404835317 1172.0 408.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1126.0" y="322.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
In plasmacytoid dendritic cells, TLR-7 or TLR-9 engagement leads to direct activation of IRF-7 through MyD88/TRAF6/IRAK4/IRAK1 recruitment.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p57" name="p57" type="cso30:c:ProcessBiological">
<csml:connector id="c158" name="c158" refID="e68" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1082.9779098504835" y="416.59409966971685"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1169.0 423.0 1082.9779098504835 416.59409966971685" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1082.7551224743397 419.5858158636482 1083.2006972266274 413.60238347578553 1075.0 416.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c159" name="c159" refID="MO000039077" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1081.3033918483932" y="425.9261801840383"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1313.0 607.0 1081.3033918483932 425.9261801840383" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1079.4560742793788 428.2899521271857 1083.1507094174074 423.5624082408909 1075.0 421.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c160" name="c160" refID="e69" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1075.0" y="419.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1075.0 419.0 1150.793244095766 455.52686462446553" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1152.0956698615914 452.82433116037777 1149.4908183299406 458.22939808855324 1158.0 458.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1060.0" y="408.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="15.0" height="15.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
In plasmacytoid dendritic cells, TLR-7 or TLR-9 engagement leads to direct activation of IRF-7 through MyD88/TRAF6/IRAK4/IRAK1 recruitment.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p58" name="p58" type="cso30:c:ProcessBiological">
<csml:connector id="c161" name="c161" refID="e69" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1089.828398279894" y="466.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1158.0 466.0 1089.828398279894 480.35191615160124" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1090.4464297230434 483.28756550656146 1089.2103668367442 477.41626679664097 1081.9999999999998 481.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c162" name="c162" refID="e64" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1087.8594077652413" y="498.44677341557644"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1224.0 625.0 1087.8594077652413 498.44677341557644" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1085.8168677344001 500.64405132754194 1089.9019477960824 496.249495503611 1082.0 493.00000000000006"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c163" name="c163" refID="e70" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1081.0" y="494.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1081.0 494.0 1152.7992335124638 577.921182027555" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1155.0787902521306 575.9708945947289 1150.5196767727969 579.871469460381 1158.0 583.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1061.0" y="473.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">
PMID: 17395583
In plasmacytoid dendritic cells, TLR-7 or TLR-9 engagement leads to direct activation of IRF-7 through MyD88/TRAF6/IRAK4/IRAK1 recruitment.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p59" name="p59" type="cso30:c:ProcessBiological">
<csml:connector id="c164" name="c164" refID="MO000000212" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="501.0" y="375.8600469883655"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="501.0 445.0 790.2192400627528 375.8600469883655" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="789.5217224421157 372.9422620118978 790.9167576833898 378.7778319648333 798.0 374.00000000000006"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c165" name="c165" refID="e70" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="823.7940411533235" y="382.2238613621835"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1158.0 590.0 823.7940411533235 382.2238613621835" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="822.2100931425047 384.77162679467983 825.3779891641423 379.6760959296872 817.0 378.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c167" name="c167" refID="e71" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="817.0" y="375.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector depth="0" points="817.0 375.0 1155.525467867721 504.14844438884154" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1156.5948012219055 501.34549483923695 1154.4561345135367 506.9513939384462 1163.0 507.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="798.0" y="362.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="edgeScore" value="1.0"/>
<csml:property key="relationType" value="Type 0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:process>
</csml:processSet>
<csml:factSet>
<csml:fact id="g2" name="g1" type="cso30:c:FactViewGroup">
<csml:participant id="participant-e45" name="participant-e45" refID="e45" type="csml-element:participant"/>
<csml:participant id="participant-e44" name="participant-e44" refID="e44" type="csml-element:participant"/>
<csml:participant id="participant-e46" name="participant-e46" refID="e46" type="csml-element:participant"/>
</csml:fact>
<csml:fact id="g1" name="g1" type="cso30:c:FactViewGroup">
<csml:participant id="participant-e3" name="participant-e3" refID="e3" type="csml-element:participant"/>
<csml:participant id="participant-e1" name="participant-e1" refID="e1" type="csml-element:participant"/>
<csml:participant id="participant-e4" name="participant-e4" refID="e4" type="csml-element:participant"/>
<csml:participant id="participant-e2" name="participant-e2" refID="e2" type="csml-element:participant"/>
</csml:fact>
<csml:fact id="g12" name="g2" type="cso30:c:FactViewGroup">
<csml:participant id="participant-e50" name="participant-e50" refID="e50" type="csml-element:participant"/>
<csml:participant id="participant-e56" name="participant-e56" refID="e56" type="csml-element:participant"/>
<csml:participant id="participant-e51" name="participant-e51" refID="e51" type="csml-element:participant"/>
<csml:participant id="participant-e52" name="participant-e52" refID="e52" type="csml-element:participant"/>
<csml:participant id="participant-g13" name="participant-g13" refID="g13" type="csml-element:participant"/>
<csml:participant id="participant-e58" name="participant-e58" refID="e58" type="csml-element:participant"/>
<csml:participant id="participant-e55" name="participant-e55" refID="e55" type="csml-element:participant"/>
<csml:participant id="participant-e54" name="participant-e54" refID="e54" type="csml-element:participant"/>
<csml:participant id="participant-e53" name="participant-e53" refID="e53" type="csml-element:participant"/>
<csml:participant id="participant-e57" name="participant-e57" refID="e57" type="csml-element:participant"/>
<csml:participant id="participant-e59" name="participant-e59" refID="e59" type="csml-element:participant"/>
</csml:fact>
<csml:fact id="g13" name="g2" type="cso30:c:FactViewGroup">
<csml:participant id="participant-e62" name="participant-e62" refID="e62" type="csml-element:participant"/>
<csml:participant id="participant-e61" name="participant-e61" refID="e61" type="csml-element:participant"/>
<csml:participant id="participant-e60" name="participant-e60" refID="e60" type="csml-element:participant"/>
</csml:fact>
<csml:fact id="g14" name="g1" type="cso30:c:FactViewGroup"/>
</csml:factSet>
<csml:modelSimulationProperty>
<csml:parameter key="enhancedFiring" value="true"/>
<csml:parameter key="discreteWeakFiring" value="false"/>
<csml:parameter key="continousWeakFiring" value="false"/>
<csml:parameter key="samplingInterval" value="0.1"/>
<csml:parameter key="plotUpdateInterval" value="1.0"/>
<csml:parameter key="logUpdateInterval" value="1.0"/>
<csml:parameter key="simulationTime" value="1000.0"/>
<csml:parameter key="firingAccuracy" value="1.0E-10"/>
</csml:modelSimulationProperty>
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:model>
<csml:subModelSet/>
<csml:viewSet>
<csml:view name="Default View" viewID="default" refModelID="undef" refShapeID="default" refPositionID="default" refAnimationID="default"/>
</csml:viewSet>
<csml:references>
<csml:unificationXref unificationXrefID="ref35" name="IPR008984" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008984" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref36" name="IPR001346" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001346" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref37" name="MO000007694" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000007694" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref38" name="MO000041456" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000041456" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref39" name="IPR000719" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000719" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref40" name="MO000019331" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019331" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref41" name="IPR000719" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000719" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref42" name="MO000016608" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016608" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref43" name="MO000022224" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000022224" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref44" name="IPR000433" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000433" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref45" name="IPR001487" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001487" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref46" name="IPR000197" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000197" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref47" name="IPR003101" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003101" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref48" name="IPR003439" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003439" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref49" name="MO000017462" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000017462" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref50" name="IPR000433" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000433" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref51" name="IPR001487" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001487" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref52" name="IPR000197" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000197" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref53" name="IPR003101" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003101" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref54" name="MO000019984" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019984" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref55" name="G010228" xlink:href="http://www.biobase.de/cgi-bin/biobase/transfac/10.4/bin/start.cgi?ac=TransFac:G010228" db="TRANSFAC">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref56" name="G010228" xlink:href="http://www.biobase.de/cgi-bin/biobase/transfac/10.4/bin/start.cgi?ac=TransFac:G010228" db="TRANSFAC">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref57" name="IPR008984" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008984" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref58" name="IPR001346" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001346" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref59" name="MO000007694" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000007694" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref60" name="MO000007702" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000007702" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref61" name="MO000041457" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000041457" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref62" name="G010713" xlink:href="http://www.biobase.de/cgi-bin/biobase/transfac/10.4/bin/start.cgi?ac=TransFac:G010713" db="TRANSFAC">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref63" name="G010713" xlink:href="http://www.biobase.de/cgi-bin/biobase/transfac/10.4/bin/start.cgi?ac=TransFac:G010713" db="TRANSFAC">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref64" name="MO000016882" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016882" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref65" name="G010522" xlink:href="http://www.biobase.de/cgi-bin/biobase/transfac/10.4/bin/start.cgi?ac=TransFac:G010522" db="TRANSFAC">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref66" name="G010522" xlink:href="http://www.biobase.de/cgi-bin/biobase/transfac/10.4/bin/start.cgi?ac=TransFac:G010522" db="TRANSFAC">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref67" name="MO000019479" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019479" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref68" name="IPR000297" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000297" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref69" name="IPR001202" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001202" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref70" name="MO000017197" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000017197" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref71" name="MO000069094" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000069094" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref72" name="MO000066987" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000066987" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref73" name="MO000103999" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000103999" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref74" name="MO000094908" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000094908" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref75" name="IPR001841" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001841" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref76" name="IPR002083" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002083" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref77" name="IPR000345" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000345" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref78" name="IPR001293" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001293" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref79" name="IPR008974" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008974" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref80" name="MO000016963" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016963" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref81" name="MO000000023" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000023" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref82" name="MO000000023" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000023" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref83" name="MO000000248" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000248" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref84" name="MO000000248" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000248" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref85" name="IPR000719" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000719" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref86" name="MO000019331" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019331" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref87" name="MO000055971" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000055971" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref88" name="MO000055971" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000055971" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref89" name="IPR000157" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000157" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref90" name="IPR003591" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003591" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref91" name="IPR000483" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000483" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref92" name="IPR001611" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001611" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref93" name="IPR000372" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000372" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref94" name="MO000019398" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019398" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref95" name="MO000041446" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000041446" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref96" name="MO000041437" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000041437" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref97" name="MO000041125" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000041125" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref98" name="IPR001841" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001841" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref99" name="IPR002083" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002083" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref100" name="IPR000504" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000504" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref101" name="IPR001293" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001293" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref102" name="IPR008974" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008974" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref103" name="MO000000212" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000212" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref104" name="MO000042126" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000042126" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref105" name="MO000042012" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000042012" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref106" name="IPR000157" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000157" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref107" name="IPR004075" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR004075" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref108" name="IPR000488" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000488" db="INTERPRO">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref109" name="MO000016573" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016573" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref110" name="MO000039077" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000039077" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref111" name="MO000007702" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000007702" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:unificationXref>
</csml:references>
</csml:project>
