majorVersion:3 minorVersion:0 projectID:local projectVersionID:undef fileName:17307033.csml convertedTime:2009.07.01.11:01

Entity

MO000000214:IL-1 MO000007330:proIL-18 MO000008179:PKR MO000016625:IL-18 MO000016828:Caspase-1 MO000019398:TLR3 MO000022224:dsRNA MO000022225:dsRNA:PKR MO000022570:eIF-2alpha MO000041446:dsRNA:TLR3 MO000042007:TLR8 MO000042126:TLR7 MO000066987:DDX58 MO000103999:IFIH1 e1: e10: e11:ssRNA e12:ssRNA:TLR7 e13:ssRNA:TLR8 e14:DDX58:ssRNA e15:DDX58{active}:ssRNA e16:V proteins e17:MDA5:V proteins e18:IAV NS1 e19:DDX58:IAV NS1 e2: e20:IFN e21:IFN e22:dsRNA:TLR3 e23:IFN-alpha e24:IFN alpha e25:Pro IL-1 e26:Nalp3 e27:Caspase-1{active} e28:Poly I:C e3: e4: e5: e50: e51: e52: e53: e54: e55: e56: e57: e58: e59: e6: e60: e61: e62: e7: e8:eIF-2alpha{p} e9:TLR3

Process

p1 p10 p11 p12 p13 p14 p15 p16 p2 p3 p4 p5 p6 p7 p8 p9
193.0, 1089.0
22.0, 22.0

IL-1

--

MO000000214

cso30:c:Protein

cso30:i:CC_CellComponent

--

p12

--

true true true true

csml-variable:Double

m185

10

false

infinite

0

unit false false false
TRANSPATHMO000000214

--

Go back
178.0, 854.0
20.0, 20.0

proIL-18

--

MO000007330

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p13

true true true true

csml-variable:Double

m841

10

false

infinite

0

unit false false false
InterProIPR008996
TRANSPATHMO000007330

--

Go back
961.0, 245.0
21.0, 21.0

PKR

--

MO000008179

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p1

true true true true

csml-variable:Double

m1055

10

false

infinite

0

unit false false false
InterProIPR000719
TRANSPATHMO000008179

--

Go back
158.0, 958.0
20.0, 20.0

IL-18

--

MO000016625

cso30:c:Protein

cso30:i:CC_CellComponent

--

p13

--

true true true true

csml-variable:Double

m1611

10

false

infinite

0

unit false false false
InterProIPR008996
TRANSPATHMO000016625

--

Go back
377.0, 905.0
22.0, 22.0

Caspase-1

--

MO000016828

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p14 p15

true true true true

csml-variable:Double

m1765

10

false

infinite

0

unit false false false
TRANSPATHMO000016828

--

Go back
762.0, 402.0
19.0, 19.0

TLR3

--

MO000019398

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p8

true true true true

csml-variable:Double

m3965

10

false

infinite

0

unit false false false
InterProIPR000157
TRANSPATHMO000019398

--

Go back
1028.0, 316.0
24.5, 24.5

dsRNA

--

MO000022224

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p1 p8 p3 p14

true true true true

csml-variable:Double

m119368

10

false

infinite

0

unit false false false
TRANSPATHMO000022224

--

Go back
959.0, 295.0
26.0, 26.0

dsRNA:PKR

--

MO000022225

cso30:c:Protein

cso30:i:CC_CellComponent

--

p1

p2

true true true true

csml-variable:Double

m6524

10

false

infinite

0

unit false false false
TRANSPATHMO000022225

--

Go back
745.0, 245.0
22.0, 22.0

eIF-2alpha

--

MO000022570

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p2

true true true true

csml-variable:Double

m6843

10

false

infinite

0

unit false false false
InterProIPR003029
TRANSPATHMO000022570

--

Go back
822.0, 442.0
20.0, 20.0

dsRNA:TLR3

--

MO000041446

cso30:c:Protein

cso30:i:CC_CellComponent

--

p8

--

true true true true

csml-variable:Double

m19314

10

false

infinite

0

unit false false false
TRANSPATHMO000041446

--

Go back
847.0, 523.0
18.0, 18.0

TLR8

--

MO000042007

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p5

true true true true

csml-variable:Double

m19823

10

false

infinite

0

unit false false false
TRANSPATHMO000042007

--

Go back
786.0, 482.0
20.0, 20.0

TLR7

--

MO000042126

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p4

true true true true

csml-variable:Double

m19940

10

false

infinite

0

unit false false false
TRANSPATHMO000042126

--

Go back
462.0, 458.0
20.0, 20.0

DDX58

--

MO000066987

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p6 p9

true true true true

csml-variable:Double

m41844

10

false

infinite

0

unit false false false
TRANSPATHMO000066987

--

Go back
370.0, 658.0
20.0, 20.0

IFIH1

--

MO000103999

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p7

true true true true

csml-variable:Double

m76904

10

false

infinite

0

unit false false false
TRANSPATHMO000103999

--

Go back
230.69102120526588, 9.438482645500528
771.4745774779069, 1592.6553516979416

--

e1

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane

--

--

--

true true true true

csml-variable:Double

m1

0

false

infinite

0

unit false true false

--

Go back
234.3453097307387, 39.95936587271336
763.8196788892242, 1527.677594910579

--

e10

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Cytosol

--

--

--

true true true true

csml-variable:Double

m10

0

false

infinite

0

unit false true false

--

Go back
1075.5, 446.0
25.48679245283019, 27.803773584905663

ssRNA

--

e11

cso30:c:RnaOther

cso30:i:CC_Cytosol

--

--

p4 p5 p6

true true true true

csml-variable:Double

m11

0

false

infinite

0

unit false false false

--

Go back
757.5, 540.0
16.5297083972813, 31.992983994738005

ssRNA:TLR7

--

e12

cso30:c:Complex

cso30:i:CC_Cytosol

--

p4

--

true true true true

csml-variable:Double

m12

0

false

infinite

0

unit false false false

--

Go back
843.5, 576.0
16.951107213330413, 32.808594606445965

ssRNA:TLR8

--

e13

cso30:c:Complex

cso30:i:CC_Cytosol

--

p5

--

true true true true

csml-variable:Double

m13

0

false

infinite

0

unit false false false

--

Go back
557.0, 520.0
21.331491712707173, 23.701657458563535

DDX58:ssRNA

--

e14

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m14

0

false

infinite

0

unit false false false

--

Go back
629.0, 696.0
21.331491712707173, 23.701657458563535

DDX58{active}:ssRNA

--

e15

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m15

0

false

infinite

0

unit false false false

--

Go back
449.0, 626.5
30.984101428858924, 19.10686254779634

V proteins

--

e16

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p7

true true true true

csml-variable:Double

m16

0

false

infinite

0

unit false false false

--

Go back
442.5, 748.0
18.943509415097477, 23.19613397767039

MDA5:V proteins

--

e17

cso30:c:Complex

cso30:i:CC_Cytosol

--

p7

--

true true true true

csml-variable:Double

m17

0

false

infinite

0

unit false false false

--

Go back
388.0, 394.5
24.159999999999997, 18.119999999999997

IAV NS1

--

e18

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p9

true true true true

csml-variable:Double

m18

0

false

infinite

0

unit false false false

--

Go back
383.5, 461.0
24.397933677720385, 29.8750208298617

DDX58:IAV NS1

--

e19

cso30:c:Complex

cso30:i:CC_Cytosol

--

true true true true

csml-variable:Double

m19

0

false

infinite

0

unit false false false

--

Go back
230.69102120526588, 9.438482645500528
771.4745774779069, 1592.6553516979416

--

e2

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m2

0

false

infinite

0

unit false true false

--

Go back
692.0, 851.0
47.33564013840831, 25.24567474048443

IFN

--

e20

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

--

p10

true true true true

csml-variable:Double

m20

0

false

infinite

0

unit false false false

--

Go back
1023.5, 826.0
16.701750855302876, 27.08392030589656

IFN

--

e21

cso30:c:Protein

cso30:i:CC_Cytosol

--

p10

--

true true true true

csml-variable:Double

m21

0

false

infinite

0

unit false false false

--

Go back
966.0, 590.0
20.0, 20.0

dsRNA:TLR3

--

e22

cso30:c:Protein

cso30:i:CC_CellComponent

--

p3

--

true true true true

csml-variable:Double

m22

10

false

infinite

0

unit false false false
TRANSPATHMO000041446

--

Go back
1029.5, 905.0
13.767961360434697, 22.326423827731936

IFN-alpha

--

e23

cso30:c:Protein

cso30:i:CC_Nucleoplasm

--

p11

--

true true true true

csml-variable:Double

m23

0

false

infinite

0

unit false false false

--

Go back
696.0, 915.0
47.33564013840831, 25.24567474048443

IFN alpha

--

e24

cso30:c:mRNA

cso30:i:CC_Nucleoplasm

--

--

p11

true true true true

csml-variable:Double

m24

0

false

infinite

0

unit false false false

--

Go back
97.0, 1005.0
22.0, 22.0

Pro IL-1

--

e25

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p12

true true true true

csml-variable:Double

m25

10

false

infinite

0

unit false false false
TRANSPATHMO000000214

--

Go back
489.0, 1135.0
14.410664172123475, 33.25537885874648

Nalp3

--

e26

cso30:c:Protein

cso30:i:CC_Cytosol

--

--

p14 p15

true true true true

csml-variable:Double

m26

0

false

infinite

0

unit false false false

--

Go back
405.0, 1021.0
22.0, 22.0

Caspase-1{active}

--

e27

cso30:c:Protein

cso30:i:CC_CellComponent

--

true true true true

csml-variable:Double

m27

10

false

infinite

0

unit false false false
TRANSPATHMO000016828

--

Go back
118.0, 719.0
37.54415475189234, 21.275021026072327

Poly I:C

--

e28

cso30:c:SmallMolecule

cso30:i:CC_Extracellular

--

--

p15

true true true true

csml-variable:Double

m28

0

false

infinite

0

unit false false false

--

Go back
246.12051275482412, 31.37588418403985
740.6155943787909, 1548.7805486208629

--

e3

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m3

0

false

infinite

0

unit false true false

--

Go back
274.66507212150594, 69.76633687648273
683.5264756454258, 1471.999643235976

--

e4

cso30:c:EntityBiologicalCompartment

cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_

--

--

--

true true true true

csml-variable:Double

m4

0

false

infinite

0

unit false true false

--

Go back
720.3483587127605, 386.54768361367644
174.4322530483757, 291.21316822483055

--

e5

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Endosome

--

--

--

true true true true

csml-variable:Double

m5

0

false

infinite

0

unit false true false

--

Go back
566.7687311269026, 758.5454579277073
299.3216957755016, 385.9459093310221

--

e50

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearEnvelopeLumen

--

--

--

true true true true

csml-variable:Double

m50

0

false

infinite

0

unit false true false

--

Go back
599.0977038549827, 767.6918149017545
175.02236959684825, 374.0584583249335

--

e51

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearPore

--

--

--

true true true true

csml-variable:Double

m51

0

false

infinite

0

unit false true false

--

Go back
570.6705036975331, 763.6966866970124
291.51815063424107, 375.64345179241195

--

e52

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearInnerMembrane

--

--

--

true true true true

csml-variable:Double

m52

0

false

infinite

0

unit false true false

--

Go back
571.2278997790515, 764.4891834307514
290.40335847120366, 374.0584583249335

--

e53

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearLumen

--

--

--

true true true true

csml-variable:Double

m53

0

false

infinite

0

unit false true false

--

Go back
566.7687311269026, 758.5454579277073
299.3216957755016, 385.9459093310221

--

e54

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearOuterMembrane

--

--

--

true true true true

csml-variable:Double

m54

0

false

infinite

0

unit false true false

--

Go back
566.7687311269026, 758.5454579277073
299.3216957755016, 385.9459093310221

--

e55

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleus

--

--

--

true true true true

csml-variable:Double

m55

0

false

infinite

0

unit false true false

--

Go back
571.2278997790515, 764.4891834307514
290.40335847120366, 374.0584583249335

--

e56

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleoplasm

--

--

--

true true true true

csml-variable:Double

m56

0

false

infinite

0

unit false true false

--

Go back
785.2679950822032, 917.04480467556
18.699974927776488, 24.06852299312129

--

e57

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearBody

--

--

--

true true true true

csml-variable:Double

m57

0

false

infinite

0

unit false true false

--

Go back
736.2171399085639, 1027.9943473990566
52.952627744269336, 68.15471910157684

--

e58

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Nucleolus

--

--

--

true true true true

csml-variable:Double

m58

0

false

infinite

0

unit false true false

--

Go back
566.7687311269026, 758.5454579277073
299.3216957755016, 385.9459093310221

--

e59

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearEnvelope

--

--

--

true true true true

csml-variable:Double

m59

0

false

infinite

0

unit false true false

--

Go back
720.3483587127605, 386.54768361367644
174.4322530483757, 291.21316822483055

--

e6

cso30:c:EntityBiologicalCompartment

cso30:i:CC_EndosomeMembrane

--

--

--

true true true true

csml-variable:Double

m6

0

false

infinite

0

unit false true false

--

Go back
637.3171706539299, 930.0566309371109
9.479078298177217, 6.489022326156442

--

e60

cso30:c:EntityBiologicalCompartment

cso30:i:CC_Chromatin

--

--

--

true true true true

csml-variable:Double

m60

0

false

infinite

0

unit false true false

--

Go back
637.0006373982494, 910.7048308056465
32.444658707263365, 83.03272381988937

--

e61

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearChromosome

--

--

--

true true true true

csml-variable:Double

m61

0

false

infinite

0

unit false true false

--

Go back
650.6115673925166, 964.7098544283385
5.0645320908898785, 7.200669816358965

--

e62

cso30:c:EntityBiologicalCompartment

cso30:i:CC_NuclearCentromere

--

--

--

true true true true

csml-variable:Double

m62

0

false

infinite

0

unit false true false

--

Go back
720.3483587127605, 386.54768361367644
174.4322530483757, 291.21316822483055

--

e7

cso30:c:EntityBiologicalCompartment

cso30:i:CC_EndosomeLumen

--

--

--

true true true true

csml-variable:Double

m7

0

false

infinite

0

unit false true false

--

Go back
753.0, 300.0
29.8780487804878, 23.902439024390247

eIF-2alpha{p}

--

e8

cso30:c:Protein

cso30:i:CC_Cytosol

--

p2

--

true true true true

csml-variable:Double

m8

0

false

infinite

0

unit false false false

--

Go back
962.0, 402.0
19.0, 19.0

TLR3

--

e9

cso30:c:Protein

cso30:i:CC_CellComponent

--

--

p3

true true true true

csml-variable:Double

m9

10

false

infinite

0

unit false false false
InterProIPR000157
TRANSPATHMO000019398

--

Go back
1057.0, 245.0
21.0, 21.0

p1

p1

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c2 : 1
stoichiometry:c3 : 1

m119368*m1055*0.1

nodelay

--

true

0

false

PMID: 17307033,11752661 The first dsRNA-binding protein to be described was PKR (Table 1), a key mediator of the antiviral action of type I interferon (IFN) PMID: 17307033 A pair of dsRNA-binding domains in the N-terminal portion of PKR binds to dsRNA.

Go back
881.0, 829.0
21.0, 21.0

p10

p10

cso30:i:ME_Translation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c28 : 1
stoichiometry:c30 : 1
stoichiometry:c29 : 1

m20*0.1

nodelay

--

true

0

false

PMID: 17307033,17038589 The Pichlmair study also demonstrated that the IAV NS1 protein, which was thought to block IFN induction by sequestering dsRNA, instead blocks by forming a complex with RIG-I to abrogate RIG-I signaling

Go back
881.0, 909.0
21.0, 21.0

p11

p11

cso30:i:ME_Translation

cso30:i:CC_Nucleoplasm

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c31 : 1
stoichiometry:c8 : 1
stoichiometry:c32 : 1

m24*m15*0.1

nodelay

--

true

0

false

PMID: 17303033 Therefore, during infection, RIG-I probably mediates local IFNa production, which is crucial for the initial antiviral response, whereas TLR7 controls systemic IFNa levels, as pDCs make a substantial contribution to the total IFNa produced during an infection.

Go back
197.0, 1009.0
21.0, 21.0

p13

p12

cso30:i:ME_Processing

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c38 : 1
stoichiometry:c49 : 1
stoichiometry:c39 : 1

m25*m27*0.1

nodelay

--

true

0

false

PMID: 17303033,17008311 An additional antiviral effector mechanism involves the production of the inflammatory cytokines interleukin (IL)-1 and IL-18, which are generated by proteolytic processing of their pro-forms through the action of caspase-1

Go back
189.0, 913.0
21.0, 21.0

p13

p13

cso30:i:ME_Processing

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c35 : 1
stoichiometry:c48 : 1
stoichiometry:c36 : 1

m841*m27*0.1

nodelay

--

true

0

false

PMID: 17303033,17008311 An additional antiviral effector mechanism involves the production of the inflammatory cytokines interleukin (IL)-1 and IL-18, which are generated by proteolytic processing of their pro-forms through the action of caspase-1

Go back
518.0, 1042.0
20.0, 20.0

p14

p14

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c40 : 1
stoichiometry:c41 : 1
stoichiometry:c43 : 1
stoichiometry:c42 : 1

m26*m1765*m119368*0.1

nodelay

--

true

0

false

PMID: 17307033,17008311 Poly(I:C), viral dsRNA and Sendai virus (SeV) all activated caspase-1 through the nucleotide oligomerization domainlike receptor protein Nalp3 (also known as cryopyrin)

Go back
458.0, 862.0
20.0, 20.0

p14

p15

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c44 : 1
stoichiometry:c45 : 1
stoichiometry:c46 : 1
stoichiometry:c47 : 1

m26*m28*m1765*0.1

nodelay

--

true

0

false

PMID: 17307033,17008311 Poly(I:C), viral dsRNA and Sendai virus (SeV) all activated caspase-1 through the nucleotide oligomerization domainlike receptor protein Nalp3 (also known as cryopyrin)

Go back
558.0, 626.0
19.0, 19.0

p16

p16

cso30:i:ME_UnknownActivation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c21 : 1
stoichiometry:c37 : 1

m14*0.1

nodelay

--

true

0

false

PMID: 17307033 Moreover, they found that ssRNA such as that from the influenza virus genome, which is uncapped and has a 50-triphosphate moiety, associated with and activated RIG-I.

Go back
842.0, 246.0
19.0, 19.0

p2

p2

cso30:i:ME_Phosphorylation

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c7 : 1
stoichiometry:c50 : 1
stoichiometry:c9 : 1

m6843*m6524*0.1

nodelay

--

true

0

false

PMID: 17307033 A pair of dsRNA-binding domains in the N-terminal portion of PKR binds to dsRNA. PKR functions to phosphorylate the a subunit of the translation initiation factor eIF2, thereby inhibiting protein synthesisA pair of dsRNA-binding domains in the N-terminal portion of PKR binds to dsRNA. PKR functions to phosphorylate the a subunit of the translation initiation factor eIF2, thereby inhibiting protein synthesis

Go back
1049.0, 389.0
21.0, 21.0

p8

p3

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c10 : 1
stoichiometry:c11 : 1
stoichiometry:c12 : 1

m119368*m9*0.1

nodelay

--

true

0

false

PMID: 17307033,15961631,16043704 The TLR3 ectodomain senses dsRNA both extracellularly and in endosomes, and its structure has been solved recently

Go back
894.0, 426.0
19.0, 19.0

p4

p4

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c13 : 1
stoichiometry:c14 : 1
stoichiometry:c17 : 1

m11*m19940*0.1

nodelay

--

true

0

false

PMID: 17307033 Single-stranded RNA of ssRNA viruses is detected through TLR7 and TLR8, which are located in the endosomal compartment

Go back
906.0, 522.0
19.0, 19.0

p4

p5

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c15 : 1
stoichiometry:c16 : 1
stoichiometry:c18 : 1

m11*m19823*0.1

nodelay

--

true

0

false

PMID: 17307033 Single-stranded RNA of ssRNA viruses is detected through TLR7 and TLR8, which are located in the endosomal compartment

Go back
557.0, 449.0
21.0, 21.0

p6

p6

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c19 : 1
stoichiometry:c34 : 1
stoichiometry:c20 : 1

m41844*m11*0.1

nodelay

--

true

0

false

PMID: 17307033,17038590 Artificial capping or base modification of this 50-triphosphate (as would occur in host RNA) abolished this response, which they showed was mediated by direct binding to RIG-I PMID: 17307033 Moreover, they found that ssRNA such as that from the influenza virus genome, which is uncapped and has a 50-triphosphate moiety, associated with and activated RIG-I.

Go back
461.0, 693.0
21.0, 21.0

p7

p7

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c22 : 1
stoichiometry:c23 : 1
stoichiometry:c24 : 1

m76904*m16*0.1

nodelay

--

true

0

false

PMID: 17307033,16672351,16625202,16714379 However, a current paradox is that, although negative-stranded paramyxoviruses do not produce detectable amounts of dsRNA, and are detected by RIG-I and not MDA5 their V proteins bind to Mda5 (and not RIG-I) and inhibit downstream signaling

Go back
897.0, 357.0
21.0, 21.0

p8

p8

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c4 : 1
stoichiometry:c5 : 1
stoichiometry:c6 : 1

m3965*m119368*0.1

nodelay

--

true

0

false

PMID: 17307033,15961631,16043704 The TLR3 ectodomain senses dsRNA both extracellularly and in endosomes, and its structure has been solved recently

Go back
461.0, 393.0
21.0, 21.0

p9

p9

cso30:i:ME_Binding

cso30:i:CC_Cytosol

--

true true true true

--

and

mass

coefficient1:0.1
coefficient2:1.0
stoichiometry:c25 : 1
stoichiometry:c26 : 1
stoichiometry:c27 : 1

m18*m41844*0.1

nodelay

--

true

0

false

PMID: 17307033,17038589 The Pichlmair study also demonstrated that the IAV NS1 protein, which was thought to block IFN induction by sequestering dsRNA, instead blocks by forming a complex with RIG-I to abrogate RIG-I signaling

Go back
1045.0, 273.4782686447068

c1

c1

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
1043.0, 341.0

c10

c10

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
981.0, 403.04966975222464

c11

c11

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
983.1117762963229, 410.0

c12

c12

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
920.9344220762334, 438.02222615706074

c13

c13

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
806.0, 444.7060336747495

c14

c14

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
932.3831679663458, 465.0

c15

c15

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
865.0, 532.0

c16

c16

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
780.0455126623185, 445.0

c17

c17

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
865.8442155145995, 541.0

c18

c18

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
482.0, 461.6379617782631

c19

c19

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
982.0, 256.0

c2

c2

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
568.0, 470.0

c20

c20

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
568.0, 544.0

c21

c21

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
390.0, 672.0

c22

c22

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
465.0, 646.0

c23

c23

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
458.6625609418811, 714.0

c24

c24

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
412.0, 404.0

c25

c25

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
472.0, 422.0

c26

c26

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
413.8161052203985, 414.0

c27

c27

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
739.0, 843.0609673153948

c28

c28

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
902.0, 840.0

c29

c29

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
992.0343357322942, 262.0

c3

c3

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
408.0, 485.0

c30

c30

cso30:c:InputInhibitor

--

true true true true

cso30:c:InputInhibitor

threshold

--

0

1,

--

Go back
743.0, 921.3474977942104

c31

c31

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
902.0, 916.2498780190218

c32

c32

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
586.0, 460.0

c34

c34

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
190.0, 874.0

c35

c35

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
179.8, 934.0

c36

c36

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
577.0, 645.0

c37

c37

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
119.0, 1017.0

c38

c38

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
204.40625482143932, 1030.0

c39

c39

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
781.0, 374.43105262456544

c4

c4

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
501.0, 1069.5998128235785

c40

c40

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
399.0, 927.0

c41

c41

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
434.87913857256365, 1035.3853430457254

c42

c42

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
539.620777861262, 341.0

c43

c43

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
469.78668248089167, 889.9612267066237

c44

c44

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
156.0, 738.0

c45

c45

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
399.0, 881.8141043230231

c46

c46

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
422.46402011135336, 882.0

c47

c47

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
217.16274885206536, 932.5630084033351

c48

c48

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
225.98858577206613, 1021.4271971001104

c49

c49

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
925.6626102817692, 332.0

c5

c5

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
868.3531602401445, 263.15135438863337

c50

c50

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
846.3721553979109, 378.0

c6

c6

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back
767.0, 256.0

c7

c7

cso30:c:InputProcess

--

true true true true

cso30:c:InputProcess

threshold

--

0

1,

--

Go back
650.0, 717.0

c8

c8

cso30:c:InputAssociation

--

true true true true

cso30:c:InputAssociation

threshold

--

0

1,

--

Go back
789.67375339717, 263.0

c9

c9

cso30:c:OutputProcess

--

true true true true

cso30:c:OutputProcess

threshold

--

0

1,

--

Go back