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PMID: 17307033,11752661
The first dsRNA-binding protein to be described was PKR
(Table 1), a key mediator of the antiviral action of type I
interferon (IFN)

PMID: 17307033
A pair of dsRNA-binding domains in
the N-terminal portion of PKR binds to dsRNA.
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PMID: 17307033,15961631,16043704
The TLR3 ectodomain
senses dsRNA both extracellularly and in endosomes,
and its structure has been solved recently</csml:comment>
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<csml:comment type="text">PMID: 17307033
A pair of dsRNA-binding domains in
the N-terminal portion of PKR binds to dsRNA. PKR
functions to phosphorylate the a subunit of the translation
initiation factor eIF2, thereby inhibiting protein
synthesisA pair of dsRNA-binding domains in
the N-terminal portion of PKR binds to dsRNA. PKR
functions to phosphorylate the a subunit of the translation
initiation factor eIF2, thereby inhibiting protein
synthesis
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PMID: 17307033,15961631,16043704
The TLR3 ectodomain
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and its structure has been solved recently</csml:comment>
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PMID: 17307033
Single-stranded RNA of ssRNA viruses is detected
through TLR7 and TLR8, which are located in the endosomal
compartment</csml:comment>
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PMID: 17307033
Single-stranded RNA of ssRNA viruses is detected
through TLR7 and TLR8, which are located in the endosomal
compartment</csml:comment>
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<csml:comment type="text">

PMID: 17307033,17038590
Artificial capping or base modification of this 50-triphosphate
(as would occur in host RNA) abolished this
response, which they showed was mediated by direct binding
to RIG-I

PMID: 17307033
Moreover, they found that
ssRNA such as that from the influenza virus genome,
which is uncapped and has a 50-triphosphate moiety,
associated with and activated RIG-I.</csml:comment>
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PMID: 17307033,16672351,16625202,16714379
However, a current paradox is that, although negative-stranded paramyxoviruses do not produce detectable amounts of
dsRNA, and are detected by RIG-I and not MDA5 their V proteins bind to Mda5 (and not RIG-I) and inhibit downstream signaling</csml:comment>
</csml:comments>
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<csml:comment type="text">

PMID: 17307033,17038589
The Pichlmair study also demonstrated that the IAV NS1 protein, which was
thought to block IFN induction by sequestering dsRNA,
instead blocks by forming a complex with RIG-I to abrogate
RIG-I signaling</csml:comment>
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indirect</csml:comment>
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PMID: 17307033,17038589
The Pichlmair study also demonstrated that the IAV NS1 protein, which was
thought to block IFN induction by sequestering dsRNA,
instead blocks by forming a complex with RIG-I to abrogate
RIG-I signaling</csml:comment>
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indirect</csml:comment>
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</csml:comment>
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<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="881.0" y="909.0"/>
<csml:shape shapeID="default" visible="true">
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<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Translation" refCellComponentID="cso30:i:CC_Nucleoplasm">
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</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 17303033
Therefore, during infection, RIG-I probably mediates local
IFNa production, which is crucial for the initial antiviral
response, whereas TLR7 controls systemic IFNa levels, as
pDCs make a substantial contribution to the total IFNa
produced during an infection.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p13" name="p13" type="cso30:c:ProcessBiological">
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<csml:connectorKinetic>
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</csml:connectorSimulationProperty>
<csml:viewProperty>
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</csml:comment>
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<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c36" name="c36" refID="MO000016625" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
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<csml:comment type="text">
</csml:comment>
</csml:comments>
</csml:connector>
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<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="189.0" y="913.0"/>
<csml:shape shapeID="default" visible="true">
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</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Processing" refCellComponentID="cso30:i:CC_Cytosol">
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</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 17303033,17008311 
An additional antiviral effector mechanism involves the
production of the inflammatory cytokines interleukin (IL)-1
and IL-18, which are generated by proteolytic processing of
their pro-forms through the action of caspase-1</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p12" name="p13" type="cso30:c:ProcessBiological">
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<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="119.0" y="1017.0"/>
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</csml:comment>
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</csml:connector>
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<csml:connector id="c39" name="c39" refID="MO000000214" type="cso30:c:OutputProcess">
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</csml:comment>
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<csml:viewProperty>
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<csml:shape shapeID="default" visible="true">
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<csml:comments>
<csml:comment type="text">

PMID: 17303033,17008311 
An additional antiviral effector mechanism involves the
production of the inflammatory cytokines interleukin (IL)-1
and IL-18, which are generated by proteolytic processing of
their pro-forms through the action of caspase-1</csml:comment>
</csml:comments>
</csml:process>
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<csml:comments>
<csml:comment type="text">

indirect</csml:comment>
</csml:comments>
</csml:connector>
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</csml:comment>
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<csml:comments>
<csml:comment type="text">

indiirect</csml:comment>
</csml:comments>
</csml:connector>
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<csml:comments>
<csml:comment type="text">
</csml:comment>
</csml:comments>
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</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
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<csml:comments>
<csml:comment type="text">

PMID: 17307033,17008311
Poly(I:C), viral dsRNA and Sendai virus (SeV) all activated
caspase-1 through the nucleotide oligomerization domainlike
receptor protein Nalp3 (also known as cryopyrin)</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">

indirect</csml:comment>
</csml:comments>
</csml:connector>
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<csml:comments>
<csml:comment type="text">

indirect</csml:comment>
</csml:comments>
</csml:connector>
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<csml:comments>
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</csml:comment>
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</csml:connector>
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PMID: 17307033,17008311
Poly(I:C), viral dsRNA and Sendai virus (SeV) all activated
caspase-1 through the nucleotide oligomerization domainlike
receptor protein Nalp3 (also known as cryopyrin)</csml:comment>
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PMID: 17307033
Moreover, they found that
ssRNA such as that from the influenza virus genome,
which is uncapped and has a 50-triphosphate moiety,
associated with and activated RIG-I.</csml:comment>
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