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This pathway does
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shown in Fig. 1. </csml:comment>
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<csml:processKinetic calcStyle="csml-calcStyle:speed" fast="false" kineticStyle="csml-kineticStyle:mass">
<csml:parameter key="coefficient2" value="1.0"/>
<csml:parameter key="coefficient1" value="0.1"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty viewID="">
<csml:position position="auto" positionID="default" x="501.0" y="69.0"/>
<csml:shape shapeID="default" visible="true">
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<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Cleavage" refCellComponentID="cso30:i:CC_Extracellular"/>
<csml:comments>
<csml:comment type="text">PMID: 16754322
Cleavage of C3 to C3b and finally
to C3bi is amplified, and zymosan is surrounded by C3bi and
incorporated effectively by phagocytes which express CR3.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p3" name="p2" type="cso30:c:ProcessBiological">
<csml:connector id="c6" name="c6" refID="e6" type="cso30:c:InputProcess">
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<csml:connectorKinetic>
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</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty viewID="">
<csml:position position="auto" positionID="default" x="588.0" y="121.0"/>
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</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c7" name="c7" refID="e11" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
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</csml:connectorKinetic>
</csml:connectorSimulationProperty>
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</targetArrow>
</csml:toolSpecificGraphics>
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</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingOnce="false" firingStyle="csml-firingStyle:and" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" fast="false" kineticStyle="csml-kineticStyle:mass">
<csml:parameter key="coefficient2" value="1.0"/>
<csml:parameter key="coefficient1" value="0.1"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty viewID="">
<csml:position position="auto" positionID="default" x="577.0" y="165.0"/>
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<csml:comments>
<csml:comment type="text">PMID: 16754322
Cleavage of C3 to C3b and finally
to C3bi is amplified, and zymosan is surrounded by C3bi and
incorporated effectively by phagocytes which express CR3.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p4" name="p4" type="cso30:c:ProcessBiological">
<csml:connector id="c8" name="c8" refID="e11" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty viewID="">
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<figure xmlns="http://www.csml.org/csml/cigraphics">
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</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c9" name="c9" refID="e12" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty viewID="">
<csml:position position="auto" positionID="default" x="588.0" y="312.0"/>
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<figure xmlns="http://www.csml.org/csml/cigraphics">
<processConnector depth="0" points="588.0 346.0 588.0 312.0" visible="true"/>
</figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="585.0 312.0 591.0 312.0 588.0 304.0" size="8.0 6.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c10" name="c10" refID="e13" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty viewID="">
<csml:position position="auto" positionID="default" x="596.0" y="303.0"/>
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<figure xmlns="http://www.csml.org/csml/cigraphics">
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<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
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</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingOnce="false" firingStyle="csml-firingStyle:and" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" fast="false" kineticStyle="csml-kineticStyle:mass">
<csml:parameter key="coefficient2" value="1.0"/>
<csml:parameter key="coefficient1" value="0.1"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty viewID="">
<csml:position position="auto" positionID="default" x="579.0" y="287.0"/>
<csml:shape shapeID="default" visible="true">
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<csml:toolSpecificGraphics/>
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<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Extracellular"/>
<csml:comments>
<csml:comment type="text">PMID: 16754322
The final product C3bi binds to three
other complement receptors CR1, CR3 (CD11b/CD18,
integrin alphaMbeta2) and CR4 (CD11c/CD18, integrin alphaXbeta2).</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p5" name="p4" type="cso30:c:ProcessBiological">
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<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty viewID="">
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<figure xmlns="http://www.csml.org/csml/cigraphics">
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</csml:connector>
<csml:connector id="c12" name="c12" refID="e14" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
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</csml:viewProperty>
</csml:connector>
<csml:connector id="c13" name="c13" refID="e15" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty viewID="">
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</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingOnce="false" firingStyle="csml-firingStyle:and" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" fast="false" kineticStyle="csml-kineticStyle:mass">
<csml:parameter key="coefficient2" value="1.0"/>
<csml:parameter key="coefficient1" value="0.1"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty viewID="">
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<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Extracellular"/>
<csml:comments>
<csml:comment type="text">PMID: 16754322
The final product C3bi binds to three
other complement receptors CR1, CR3 (CD11b/CD18,
integrin alphaMbeta2) and CR4 (CD11c/CD18, integrin alphaXbeta2).</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p6" name="p4" type="cso30:c:ProcessBiological">
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</csml:viewProperty>
</csml:connector>
<csml:connector id="c16" name="c16" refID="e16" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
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<csml:firing firingOnce="false" firingStyle="csml-firingStyle:and" type="csml-variable:Boolean" value="true"/>
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<csml:processKinetic calcStyle="csml-calcStyle:speed" fast="false" kineticStyle="csml-kineticStyle:mass">
<csml:parameter key="coefficient2" value="1.0"/>
<csml:parameter key="coefficient1" value="0.1"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty viewID="">
<csml:position position="auto" positionID="default" x="703.0" y="279.0"/>
<csml:shape shapeID="default" visible="true">
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<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Extracellular"/>
<csml:comments>
<csml:comment type="text">PMID: 16754322
The final product C3bi binds to three
other complement receptors CR1, CR3 (CD11b/CD18,
integrin alphaMbeta2) and CR4 (CD11c/CD18, integrin alphaXbeta2).</csml:comment>
</csml:comments>
</csml:process>
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</csml:connectorSimulationProperty>
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<figure xmlns="http://www.csml.org/csml/cigraphics">
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</csml:connector>
<csml:connector id="c18" name="c18" refID="e18" type="cso30:c:InputProcess">
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<csml:connectorKinetic>
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</csml:connectorSimulationProperty>
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</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c20" name="c20" refID="e20" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty viewID="">
<csml:position position="auto" positionID="default" x="680.5777087639997" y="62.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<figure xmlns="http://www.csml.org/csml/cigraphics">
<associationConnector depth="0" points="697.0 62.0 680.5777087639997 94.84458247200067" visible="true"/>
</figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="683.2609903369994 96.18622325850055 677.8944271909999 93.5029416855008 677.0 102.0" size="8.0 6.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">indirect
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c19" name="c19" refID="e19" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty viewID="">
<csml:position position="auto" positionID="default" x="675.0" y="121.0"/>
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<csml:comment type="text">PMID: 16754322
As previously described, C3b is spontaneously
produced and destroyed, and when non-self microbes
such as zymosan are exposed to the serum at 37 degreeC, C3b binds
to zymosan covalently and becomes C3 convertase by the
action of cofactor proteins.</csml:comment>
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<csml:comment type="text">PMID: 16754322
In
addition to these roles in immunoreceptor signaling, Syk is
also activated on ligation with cell surface integrins, such as
integrin alphaIIbbeta3 in platelets and beta2 integrin in neutrophils or
monocytes.</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">PMID: 16754322
In
addition to these roles in immunoreceptor signaling, Syk is
also activated on ligation with cell surface integrins, such as
integrin alphaIIbbeta3 in platelets and beta2 integrin in neutrophils or
monocytes.</csml:comment>
</csml:comments>
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<csml:processKinetic calcStyle="csml-calcStyle:speed" fast="false" kineticStyle="csml-kineticStyle:mass">
<csml:parameter key="coefficient2" value="1.0"/>
<csml:parameter key="coefficient1" value="0.1"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty viewID="">
<csml:position position="auto" positionID="default" x="803.0" y="235.0"/>
<csml:shape shapeID="default" visible="true">
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<csml:comments>
<csml:comment type="text">PMID: 16754322
Zymosan
particles were pretreated with the normal serum in order that
C3bi in the serum bind to zymosan (C3bi-zymosan).</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">indirect</csml:comment>
</csml:comments>
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</csml:processKinetic>
</csml:processSimulationProperty>
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<csml:comments>
<csml:comment type="text">PMID: 16754322
Next we analyzed the dynamics of endogenous Syk in the
cells pretreated with C3bi-zymosan and found that Syk was
tyrosine-phosphorylated and obviously accumulated in the
region of forming phagosomes.</csml:comment>
</csml:comments>
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<csml:comment type="text">PMID: 16754322
Treatment of the parental HL60 cells with C3bi-zymosan led
to the prompt activation of RhoA, but DN-Syk/HL or SyksiRNA/
HL cells revealed suppressed RhoA activation.</csml:comment>
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<csml:firing firingOnce="false" firingStyle="csml-firingStyle:and" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" fast="false" kineticStyle="csml-kineticStyle:mass">
<csml:parameter key="coefficient2" value="1.0"/>
<csml:parameter key="coefficient1" value="0.1"/>
</csml:processKinetic>
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<csml:comments>
<csml:comment type="text">PMID: 16754322
Next we examined the tyrosine phosphorylation of Vav,
a guanine nucleotide exchange factor of RhoA and found
that Vav was tyrosine-phosphorylated prior to RhoA
activation in the parental HL60 cells but the phosphorylation
was reduced in DN-Syk/HL or Syk-siRNA/HL
cells just like the pattern of RhoA activation.</csml:comment>
</csml:comments>
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