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<csml:comments>
<csml:comment type="text">



PMID: 15283983,9041265,8591843
IFN-a also
confers immunomodulatory benefits. For example, binding
to its cognate cell-surface receptor on immune cells can
result in: a
reduction in inflammation by inhibiting production of
IL-1, IL-8 and tumor necrosis factor (TNF)-a
</csml:comment>
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indirect</csml:comment>
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<csml:comment type="text">



PMID: 15283983,9041265,8591843
IFN-a also
confers immunomodulatory benefits. For example, binding
to its cognate cell-surface receptor on immune cells can
result in: a
reduction in inflammation by inhibiting production of
IL-1, IL-8 and tumor necrosis factor (TNF)-a
</csml:comment>
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<csml:comment type="text">



indirect</csml:comment>
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PMID: 15283983,9041265,8591843
IFN-a also
confers immunomodulatory benefits. For example, binding
to its cognate cell-surface receptor on immune cells can
result in: a
reduction in inflammation by inhibiting production of
IL-1, IL-8 and tumor necrosis factor (TNF)-a
</csml:comment>
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indirect</csml:comment>
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PMID: 15283983,9041265,8591843
IFN-a also
confers immunomodulatory benefits. For example, binding
to its cognate cell-surface receptor on immune cells can
result in: a
reduction in inflammation by inhibiting production of
IL-1, IL-8 and tumor necrosis factor (TNF)-a
</csml:comment>
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<csml:comment type="text">


PMID:15283983,9857039,11427497
treatment ofcultured mammalian cells with IFN-a or TNF-a results in induction of SOCS1
and SOCS3</csml:comment>
</csml:comments>
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indirect</csml:comment>
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<csml:comment type="text">



PMID:15283983,9857039,11427497
treatment ofcultured mammalian cells with IFN-a or TNF-a results in induction of SOCS1
and SOCS3</csml:comment>
</csml:comments>
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indirect</csml:comment>
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</csml:comment>
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<csml:comments>
<csml:comment type="text">



PMID: 15283983
TNF-a stimulates expression of SOCS3 and SHP2, which bind to the JAK &#8211;IFN
receptor complex.</csml:comment>
</csml:comments>
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indirect</csml:comment>
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<csml:comments>
<csml:comment type="text">



PMID:15283983,9857039,11427497
treatment ofcultured mammalian cells with IFN-a or TNF-a results in induction of SOCS1
and SOCS3</csml:comment>
</csml:comments>
</csml:process>
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indirect</csml:comment>
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<csml:comments>
<csml:comment type="text">



PMID:15283983,9857039,11427497
treatment ofcultured mammalian cells with IFN-a or TNF-a results in induction of SOCS1
and SOCS3</csml:comment>
</csml:comments>
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indirect</csml:comment>
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<csml:comments>
<csml:comment type="text">



PMID: 15283983
TNF-a stimulates expression of SOCS3 and SHP2, which bind to the JAK &#8211;IFN
receptor complex.</csml:comment>
</csml:comments>
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</csml:comment>
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<csml:comments>
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</csml:comment>
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<csml:comments>
<csml:comment type="text">



PMID: 15283983
NS5A binds to PKR in a region that overlaps the ISDR
domain, and would be expected to suppress its function
in vivo.</csml:comment>
</csml:comments>
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indirect</csml:comment>
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PMID:15283983
Specifically, the
signal transducer and activator of transcription (STAT)
family of latent cytoplasmic transcription factors become
tyrosine phosphorylated by the Janus family of tyrosine
kinases (JAK) following binding of IFNs to their cognate
multi-subunit transmembrane receptor

PMID:15283983
This interaction prevents STAT activation and translocation to
the nucleus, where it would otherwise induce antiviral response genes containing
an ISRE.

PMID: 15283983,9857039,11427497
treatment ofcultured mammalian cells with IFN-a or TNF-a results in induction of SOCS1
and SOCS3, the only two SOCS proteins reported
to inhibit IFN-mediated antiviral and antiproliferative
activities 

PMID: 15283983,12551851
Consistent with this observation, an initial
report by Bode et al. claimed that overexpression of the
HCV core protein inhibits IFN-a-induced tyrosine phosphorylation
and activation of STAT1 in hepatic cells.
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PMID: 15283983
TNF-a stimulates expression of SOCS3 and SHP2, which bind to the JAK &#8211;IFN
receptor complex.</csml:comment>
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PMID:15283983
This interaction prevents STAT activation and translocation to
the nucleus, where it would otherwise induce antiviral response genes containing
an ISRE.</csml:comment>
</csml:comments>
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</csml:comment>
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PMID: 15283983
Specifically, they (STAT)
recognize DNA promoter elements to modulate type I IFN
(IFN-a and IFN-b) genes selectively, and also recognize
the interferon-stimulated response element (ISRE) in
some ISGs, leading to induction of an antiviral state.

PMID:15283983
This interaction prevents STAT activation and translocation to
the nucleus, where it would otherwise induce antiviral response genes containing
an ISRE.</csml:comment>
</csml:comments>
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<csml:comment type="text">



indirect</csml:comment>
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<csml:comment type="text">



PMID: 15283983
Specifically, they (STAT)
recognize DNA promoter elements to modulate type I IFN
(IFN-a and IFN-b) genes selectively, and also recognize
the interferon-stimulated response element (ISRE) in
some ISGs, leading to induction of an antiviral state.

PMID:15283983
This interaction prevents STAT activation and translocation to
the nucleus, where it would otherwise induce antiviral response genes containing
an ISRE.</csml:comment>
</csml:comments>
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indirect</csml:comment>
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<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
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</csml:processKinetic>
</csml:processSimulationProperty>
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</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 15283983
Specifically, they (STAT)
recognize DNA promoter elements to modulate type I IFN
(IFN-a and IFN-b) genes selectively, and also recognize
the interferon-stimulated response element (ISRE) in
some ISGs, leading to induction of an antiviral state.</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">


</csml:comment>
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</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 15283983
Specifically, they (STAT)
recognize DNA promoter elements to modulate type I IFN
(IFN-a and IFN-b) genes selectively, and also recognize
the interferon-stimulated response element (ISRE) in
some ISGs, leading to induction of an antiviral state.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p19" name="p19" type="cso30:c:ProcessBiological">
<csml:connector id="c46" name="c46" refID="MO000008179" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
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<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
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<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
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</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
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</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="344.0" y="316.0"/>
<csml:shape shapeID="default" visible="true">
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<csml:toolSpecificGraphics/>
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<csml:comments>
<csml:comment type="text">



PMID: 15283983
Similar to NS5A, the HCV E2 protein was reported to
contain a double-stranded (ds)RNA-activated protein
kinase eukaryotic initiation factor 2a (PKR-eIF2a) homology
domain, which might be capable of interacting with
and inactivating PKR.</csml:comment>
</csml:comments>
</csml:process>
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</csml:connectorSimulationProperty>
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<csml:comments>
<csml:comment type="text">



indirect</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
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</csml:processKinetic>
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<csml:viewProperty>
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</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 15283983
TNF-a stimulates expression of SOCS3 and SHP2, which bind to the JAK &#8211;IFN
receptor complex.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p21" name="p13" type="cso30:c:ProcessBiological">
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<csml:comments>
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</csml:comment>
</csml:comments>
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<csml:comments>
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</csml:comment>
</csml:comments>
</csml:connector>
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<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">



PMID: 15283983
TNF-a stimulates expression of SOCS3 and SHP2, which bind to the JAK &#8211;IFN
receptor complex.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p22" name="p20" type="cso30:c:ProcessBiological">
<csml:connector id="c55" name="c55" refID="e15" type="cso30:c:InputAssociation">
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<csml:comments>
<csml:comment type="text">



indirect</csml:comment>
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PMID: 15283983
TNF-a stimulates expression of SOCS3 and SHP2, which bind to the JAK &#8211;IFN
receptor complex.</csml:comment>
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PMID: 15283983
TNF-a stimulates expression of SOCS3 and SHP2, which bind to the JAK &#8211;IFN
receptor complex.</csml:comment>
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PMID: 15283983,10048763
Characterization
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of ISG15 and interaction with the CBP/p300 coactivator</csml:comment>
</csml:comments>
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<csml:comment type="text">



PMID: 15283983,10048763
Characterization
of IRF-3 showed regulatory activity by binding to the ISRE
of ISG15 and interaction with the CBP/p300 coactivator</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">



PMID: 15283983,10048763
Characterization
of IRF-3 showed regulatory activity by binding to the ISRE
of ISG15 and interaction with the CBP/p300 coactivator</csml:comment>
</csml:comments>
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indirect</csml:comment>
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PMID: 15283983,9857039,11427497
treatment ofcultured mammalian cells with IFN-a or TNF-a results in induction of SOCS1
and SOCS3, the only two SOCS proteins reported
to inhibit IFN-mediated antiviral and antiproliferative
activities 

</csml:comment>
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<csml:comment type="text">



PMID: 15283983,9857039,11427497
treatment ofcultured mammalian cells with IFN-a or TNF-a results in induction of SOCS1
and SOCS3, the only two SOCS proteins reported
to inhibit IFN-mediated antiviral and antiproliferative
activities </csml:comment>
</csml:comments>
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<csml:comment type="text">



PMID: 15283983,14644140,10453004,11390452,12433373
SOCS1 and SOCS3 expression can be induced by various
cytokines, and can also be
induced by, and negatively regulate, LPS and CpG DNA,
which are conserved bacterial components characterized
as structural correlates of PAMP </csml:comment>
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indirect</csml:comment>
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<csml:comment type="text">



PMID: 15283983,14644140,10453004,11390452,12433373
SOCS1 and SOCS3 expression can be induced by various
cytokines, and can also be
induced by, and negatively regulate, LPS and CpG DNA,
which are conserved bacterial components characterized
as structural correlates of PAMP </csml:comment>
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<csml:comment type="text">



indirect</csml:comment>
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<csml:comment type="text">



PMID: 15283983,14644140,10453004,11390452,12433373
SOCS1 and SOCS3 expression can be induced by various
cytokines, and can also be
induced by, and negatively regulate, LPS and CpG DNA,
which are conserved bacterial components characterized
as structural correlates of PAMP </csml:comment>
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indirect</csml:comment>
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PMID: 15283983,14644140,10453004,11390452,12433373
SOCS1 and SOCS3 expression can be induced by various
cytokines, and can also be
induced by, and negatively regulate, LPS and CpG DNA,
which are conserved bacterial components characterized
as structural correlates of PAMP </csml:comment>
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indirect</csml:comment>
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PMID: 15283983,14644140,10453004,11390452,12433373
SOCS1 and SOCS3 expression can be induced by various
cytokines, and can also be
induced by, and negatively regulate, LPS and CpG DNA,
which are conserved bacterial components characterized
as structural correlates of PAMP </csml:comment>
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<csml:comment type="text">



PMID: 15283983,14644140,10453004,11390452,12433373
SOCS1 and SOCS3 expression can be induced by various
cytokines, and can also be
induced by, and negatively regulate, LPS and CpG DNA,
which are conserved bacterial components characterized
as structural correlates of PAMP </csml:comment>
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<csml:comment type="text">



PMID: 15283983,14630206
This
same pathway can be induced by activation of other
cytokine receptors including those for IL-6 and IL-10</csml:comment>
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<csml:comments>
<csml:comment type="text">



PMID: 15283983,14630206
This
same pathway can be induced by activation of other
cytokine receptors including those for IL-6 and IL-10</csml:comment>
</csml:comments>
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<csml:comment type="text">



indirect</csml:comment>
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</csml:comment>
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<csml:comments>
<csml:comment type="text">



PMID: 15283983,14630206
This
same pathway can be induced by activation of other
cytokine receptors including those for IL-6 and IL-10</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">


</csml:comment>
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</csml:comment>
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<csml:comments>
<csml:comment type="text">


</csml:comment>
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<csml:comments>
<csml:comment type="text">



PMID: 15283983,14630206
This
same pathway can be induced by activation of other
cytokine receptors including those for IL-6 and IL-10</csml:comment>
</csml:comments>
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</csml:comment>
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</csml:comment>
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</csml:comment>
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<csml:comments>
<csml:comment type="text">



PMID: 15283983,14630206
This
same pathway can be induced by activation of other
cytokine receptors including those for IL-6 and IL-10</csml:comment>
</csml:comments>
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<csml:comments>
<csml:comment type="text">



indirect</csml:comment>
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PMID: 15283983,14630206
This
same pathway can be induced by activation of other
cytokine receptors including those for IL-6 and IL-10</csml:comment>
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PMID: 15283983,10048763
Characterization
of IRF-3 showed regulatory activity by binding to the ISRE
of ISG15 and interaction with the CBP/p300 coactivator</csml:comment>
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