Entity
IFN-beta
--
G010228
cso30:c:mRNA
cso30:i:CC_Nucleoplasm
--
csml-variable:Double
m93217
10
infinite
0
TRANSFAC | G010228 |
--
NF-kappaB
--
MO000000058
cso30:c:Protein
cso30:i:CC_CellComponent
--
--
csml-variable:Double
m14
10
infinite
0
TRANSPATH | MO000000058 |
--
c-Fos
--
MO000000279
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m221
10
infinite
0
InterPro | IPR002114 |
TRANSPATH | MO000000279 |
--
IFNalpha, IFNbeta
--
MO000038482
cso30:c:Protein
cso30:i:CC_CellComponent
--
--
csml-variable:Double
m16692
10
infinite
0
TRANSPATH | MO000038482 |
--
IRF-3{p}
--
MO000041456
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m19324
10
infinite
0
TRANSPATH | MO000041456 |
--
IRF-7{p}
--
MO000041457
cso30:c:Protein
cso30:i:CC_CellComponent
--
csml-variable:Double
m19325
10
infinite
0
TRANSPATH | MO000041457 |
--
--
e1
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane
--
--
--
csml-variable:Double
m1
0
infinite
0
--
--
e10
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cytosol
--
--
--
csml-variable:Double
m10
0
infinite
0
--
unmethylated DNA
--
e11
cso30:c:Dna
cso30:i:CC_Extracellular
--
csml-variable:Double
m11
0
infinite
0
--
csml-variable:Double
m12
10
infinite
0
Affymetrix | 103634_at |
Ensembl | ENSMUSG00000002325 |
InterPro | IPR008984 |
MGD | MGI:107587 |
Proteome | HumanPSD/Isgf3g |
RefSeq | NM_008394 |
TRANSFAC | T05096 |
TRANSPATH | MO000031278 |
Unigene | Mm.2032 |
UniProt | Q61179 |
--
IFNAR1: IFNAR2: Jak1: Tyk2
--
e14
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
csml-variable:Double
m15
0
infinite
0
--
IFNAR1: IFNAR2: Jak1: Tyk2: IFNalpha,IFNbeta
--
e15
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m16
0
infinite
0
--
csml-variable:Double
m17
0
infinite
0
--
IFNAR1: IFNAR2: Jak1{activated}: Tyk2 {activated}: IFNalpha,IFNbeta
--
e17
cso30:c:Complex
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
csml-variable:Double
m18
0
infinite
0
--
csml-variable:Double
m19
0
infinite
0
--
csml-variable:Double
m20
0
infinite
0
--
--
e2
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m2
0
infinite
0
--
ISRE
--
e20
cso30:c:Dna
cso30:i:CC_Nucleoplasm
--
csml-variable:Double
m21
0
infinite
0
--
ISGF3: ISRE
--
e21
cso30:c:Complex
cso30:i:CC_Nucleoplasm
--
csml-variable:Double
m22
0
infinite
0
--
csml-variable:Double
m23
0
infinite
0
--
DRAF1
--
e25
cso30:c:Complex
cso30:i:CC_NuclearChromosome
--
csml-variable:Double
m26
0
infinite
0
--
IRF-7: IRF-7 {p}
--
e26
cso30:c:Protein
cso30:i:CC_Cytosol
--
csml-variable:Double
m27
0
infinite
0
--
IRF-3{p}: IRF-7{p}
--
e27
cso30:c:Complex
cso30:i:CC_Cytosol
--
csml-variable:Double
m28
0
infinite
0
--
csml-variable:Double
m29
10
infinite
0
--
csml-variable:Double
m30
10
infinite
0
Affymetrix | 1418930_at |
Ensembl | ENSMUSG00000034855 |
MGD | Cxcl10 |
Proteome | HumanPSD/Cxcl10 |
RefSeq | NM_021274 |
TRANSFAC | G001062 |
Unigene | Mm.263514 |
--
--
e3
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_
--
--
--
csml-variable:Double
m3
0
infinite
0
--
csml-variable:Double
m31
10
infinite
0
Affymetrix | 116778_at |
Ensembl | ENSMUSG00000024079 |
MGD | Eif2ak2 |
Proteome | HumanPSD/Eif2ak2 |
RefSeq | NM_011163 |
TRANSFAC | G001168 |
Unigene | Mm.378990 |
--
--
e4
cso30:c:EntityBiologicalCompartment
cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_
--
--
--
csml-variable:Double
m4
0
infinite
0
--
IFN-alpha
--
e5
cso30:c:mRNA
cso30:i:CC_CellComponent
--
csml-variable:Double
m5
10
infinite
0
TRANSPATH | G016992 |
--
--
e50
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelopeLumen
--
--
--
csml-variable:Double
m50
0
infinite
0
--
--
e51
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearPore
--
--
--
csml-variable:Double
m51
0
infinite
0
--
--
e52
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearInnerMembrane
--
--
--
csml-variable:Double
m52
0
infinite
0
--
--
e53
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearLumen
--
--
--
csml-variable:Double
m53
0
infinite
0
--
--
e54
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearOuterMembrane
--
--
--
csml-variable:Double
m54
0
infinite
0
--
--
e55
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleus
--
--
--
csml-variable:Double
m55
0
infinite
0
--
--
e56
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleoplasm
--
--
--
csml-variable:Double
m56
0
infinite
0
--
--
e57
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearBody
--
--
--
csml-variable:Double
m57
0
infinite
0
--
--
e58
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Nucleolus
--
--
--
csml-variable:Double
m58
0
infinite
0
--
--
e59
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearEnvelope
--
--
--
csml-variable:Double
m59
0
infinite
0
--
AAF {nucleus}
--
e6
cso30:c:Protein
cso30:i:CC_Cytosol
--
csml-variable:Double
m6
0
infinite
0
--
--
e60
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Chromatin
--
--
--
csml-variable:Double
m60
0
infinite
0
--
--
e61
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearChromosome
--
--
--
csml-variable:Double
m61
0
infinite
0
--
--
e62
cso30:c:EntityBiologicalCompartment
cso30:i:CC_NuclearCentromere
--
--
--
csml-variable:Double
m62
0
infinite
0
--
--
e7
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell
--
--
--
csml-variable:Double
m7
0
infinite
0
--
--
e8
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cell_WithoutCellWall_
--
--
--
csml-variable:Double
m8
0
infinite
0
--
--
e9
cso30:c:EntityBiologicalCompartment
cso30:i:CC_Cytoplasm
--
--
--
csml-variable:Double
m9
0
infinite
0
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c1 : 1
stoichiometry:c2 : 1
stoichiometry:c3 : 1
m15*m16692*0.1
nodelay
--
0
PMID: 11790540, 11355893 In turn, virally induced IFN-alpha/beta activates Jak protein tyrosine kinases (Jak1 and Tyk2), leading to formation of both the ISGF3 transcriptional complex and AAF: the former activates several IFN-inducible genes including IRF-7 [39], whereas the latter mediates activation of the IRF-1 gene by its binding to GAS (IFN-gamma-activated site).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c27 : 1
stoichiometry:c28 : 1
m23*0.1
nodelay
--
0
PMID: 11790540 IRF-1 in turn induces genes such as that for iNOS.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c41 : 1
stoichiometry:c40 : 1
m26*0.1
nodelay
--
0
PMID: 11790540, 9707562, 9566918, 9541017 This phosphorylated IRF-3 then undergoes nuclear translocation, interacts with coactivators CBP and p300, and primarily activates the IFN-beta promoter. PMID: 11790540, 3805784, 6802744 In this context, it is interesting to note that IFN-alpha/beta are also induced by nonviral, pathogen-associated molecules, such as lipopolysaccharide (LPS) and unmethylated DNA.
p12
p12
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c42 : 1
stoichiometry:c46 : 1
stoichiometry:c43 : 1
m980*m119368*0.1
nodelay
--
0
PMID: 11790540, 9822609, 9877175, 9786932 Subsequently the de novo produced IRF-7 undergoes virus-induced phosphorylation, similar to IRF-3, and activates the IFN-alpha/beta promoters.
p13
p13
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c29 : 1
stoichiometry:c30 : 1
stoichiometry:c31 : 1
m155666*m977*0.1
nodelay
--
0
PMID: 11790540, 7559546, 9488451 Briefly, viral infections result in phosphorylation of the constitutively expressed IRF-3 at its carboxy-terminal region, converting it to its active form. PMID: 11790540, 3805784, 6802744 In this context, it is interesting to note that IFN-alpha/beta are also induced by nonviral, pathogen-associated molecules, such as lipopolysaccharide (LPS) and unmethylated DNA.
p14
p14
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c32 : 1
stoichiometry:c34 : 1
stoichiometry:c33 : 1
m977*m119368*0.1
nodelay
--
0
PMID: 11790540, 7559546, 9488451 Briefly, viral infections result in phosphorylation of the constitutively expressed IRF-3 at its carboxy-terminal region, converting it to its active form. PMID: 11790540, 7559546, 9488451 In fact, IRF-3 interacts with the CREB-binding protein (CBP)/p300 coativators, forming a complex, termed double-stranded RNA-activated factor 1 (DRAF1), for some IFN-inducible genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c35 : 1
stoichiometry:c36 : 1
m19324*0.1
nodelay
--
0
PMID: 11790540, 9707562, 9566918, 9541017 This phosphorylated IRF-3 then undergoes nuclear translocation, interacts with coactivators CBP and p300, and primarily activates the IFN-beta promoter.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c37 : 1
stoichiometry:c38 : 1
stoichiometry:c39 : 1
m24*m25*0.1
nodelay
--
0
PMID: 11790540, 9707562, 9566918, 9541017 This phosphorylated IRF-3 then undergoes nuclear translocation, interacts with coactivators CBP and p300, and primarily activates the IFN-beta promoter. PMID: 11790540, 7559546, 9488451 In fact, IRF-3 interacts with the CREB-binding protein (CBP)/p300 coativators, forming a complex, termed double-stranded RNA-activated factor 1 (DRAF1), for some IFN-inducible genes.
p17
p17
cso30:i:ME_Phosphorylation
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c44 : 1
stoichiometry:c47 : 1
stoichiometry:c45 : 1
m980*m155666*0.1
nodelay
--
0
PMID: 11790540, 9822609, 9877175, 9786932 Subsequently the de novo produced IRF-7 undergoes virus-induced phosphorylation, similar to IRF-3, and activates the IFN-alpha/beta promoters. PMID: 11790540, 3805784, 6802744 In this context, it is interesting to note that IFN-alpha/beta are also induced by nonviral, pathogen-associated molecules, such as lipopolysaccharide (LPS) and unmethylated DNA.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c48 : 1
stoichiometry:c50 : 1
m27*0.1
nodelay
--
0
PMID: 11790540, 9822609, 9877175, 9786932 Subsequently the de novo produced IRF-7 undergoes virus-induced phosphorylation, similar to IRF-3, and activates the IFN-alpha/beta promoters. PMID: 11790540, 11318879 In the absence of the other, IRF-3 acts on the IFN-beta gene, whereas IRF-7 acts on both IFN-alpha and IFN-beta genes by forming homodimers, and both IRF-3 and IRF-7 are required, functioning as a heterodimer, for amplifying the induction of IFN-beta and certain IFN-alpha family genes. PMID: 11790540, 3805784, 6802744 In this context, it is interesting to note that IFN-alpha/beta are also induced by nonviral, pathogen-associated molecules, such as lipopolysaccharide (LPS) and unmethylated DNA.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c49 : 1
stoichiometry:c51 : 1
m27*0.1
nodelay
--
0
PMID: 11790540, 9822609, 9877175, 9786932 Subsequently the de novo produced IRF-7 undergoes virus-induced phosphorylation, similar to IRF-3, and activates the IFN-alpha/beta promoters. PMID: 11790540, 11318879 In the absence of the other, IRF-3 acts on the IFN-beta gene, whereas IRF-7 acts on both IFN-alpha and IFN-beta genes by forming homodimers, and both IRF-3 and IRF-7 are required, functioning as a heterodimer, for amplifying the induction of IFN-beta and certain IFN-alpha family genes. PMID: 11790540, 3805784, 6802744 In this context, it is interesting to note that IFN-alpha/beta are also induced by nonviral, pathogen-associated molecules, such as lipopolysaccharide (LPS) and unmethylated DNA.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c4 : 1
stoichiometry:c5 : 1
m16*0.1
nodelay
--
0
PMID: 11790540, 11355893 In turn, virally induced IFN-alpha/beta activates Jak protein tyrosine kinases (Jak1 and Tyk2), leading to formation of both the ISGF3 transcriptional complex and AAF: the former activates several IFN-inducible genes including IRF-7 [39], whereas the latter mediates activation of the IRF-1 gene by its binding to GAS (IFN-gamma-activated site).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c52 : 1
stoichiometry:c53 : 1
m19325*0.1
nodelay
--
0
PMID: 11790540, 11318879 In the absence of the other, IRF-3 acts on the IFN-beta gene, whereas IRF-7 acts on both IFN-alpha and IFN-beta genes by forming homodimers, and both IRF-3 and IRF-7 are required, functioning as a heterodimer, for amplifying the induction of IFN-beta and certain IFN-alpha family genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c56 : 1
stoichiometry:c55 : 1
m28*0.1
nodelay
--
0
PMID: 11790540, 11318879 In the absence of the other, IRF-3 acts on the IFN-beta gene, whereas IRF-7 acts on both IFN-alpha and IFN-beta genes by forming homodimers, and both IRF-3 and IRF-7 are required, functioning as a heterodimer, for amplifying the induction of IFN-beta and certain IFN-alpha family genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c57 : 1
stoichiometry:c54 : 1
m28*0.1
nodelay
--
0
PMID: 11790540, 11318879 In the absence of the other, IRF-3 acts on the IFN-beta gene, whereas IRF-7 acts on both IFN-alpha and IFN-beta genes by forming homodimers, and both IRF-3 and IRF-7 are required, functioning as a heterodimer, for amplifying the induction of IFN-beta and certain IFN-alpha family genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c60 : 1
stoichiometry:c59 : 1
m11*0.1
nodelay
--
0
PMID: 11790540, 3805784, 6802744 In this context, it is interesting to note that IFN-alpha/beta are also induced by nonviral, pathogen-associated molecules, such as lipopolysaccharide (LPS) and unmethylated DNA.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c61 : 1
stoichiometry:c58 : 1
m11*0.1
nodelay
--
0
PMID: 11790540, 3805784, 6802744 In this context, it is interesting to note that IFN-alpha/beta are also induced by nonviral, pathogen-associated molecules, such as lipopolysaccharide (LPS) and unmethylated DNA.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c62 : 1
stoichiometry:c64 : 1
m26*0.1
nodelay
--
0
PMID: 11790540 More recently, genetic evidence has indicated that some IFN-inducible genes, such as ISG15 and IP-10, are indeed activated in virally infected cells in the absence of ISGF3 by a mechanism dependent on IRF-3 (in the context of the DRAF1 complex) but not on IRF-7.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c63 : 1
stoichiometry:c65 : 1
m26*0.1
nodelay
--
0
PMID: 11790540 More recently, genetic evidence has indicated that some IFN-inducible genes, such as ISG15 and IP-10, are indeed activated in virally infected cells in the absence of ISGF3 by a mechanism dependent on IRF-3 (in the context of the DRAF1 complex) but not on IRF-7.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c66 : 1
stoichiometry:c68 : 1
m22*0.1
nodelay
--
0
PMID: 11790540 Moreover, these genes are also activated by ISGF3 in the absence of IRF-3.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c67 : 1
stoichiometry:c69 : 1
m22*0.1
nodelay
--
0
PMID: 11790540 Moreover, these genes are also activated by ISGF3 in the absence of IRF-3.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c70 : 1
stoichiometry:c71 : 1
m22*0.1
nodelay
--
0
PMID: 11790540, 11355893 By contrast, the induction of other genes, such as 2¡ì-5¡ì oligoadenylate synthetase (OAS) and double-stranded-RNA-dependent protein kinase (PKR) is totally dependent on ISGF3, which cannot directly activate the IFN-alpha/beta genes.
p3
p3
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c6 : 1
stoichiometry:c7 : 1
stoichiometry:c8 : 1
stoichiometry:c10 : 1
stoichiometry:c9 : 1
m1357*m1358*m12*m18*0.1
nodelay
--
0
PMID: 11790540 The IFN-alpha/beta stimulation of the homologous receptor complex, termed IFNAR, leads to the formation of two transcriptional activator complexes: IFN-alpha-activated factor (AAF), which is a homodimer of signal transducer and activator of transcription (Stat)1; and IFN-stimulated gene factor 3 (ISGF3), which comprises Stat1, Stat2 and a member of the IRF family, IRF-9 (also known as p48).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c73 : 1
stoichiometry:c72 : 1
m22*0.1
nodelay
--
0
PMID: 11790540, 11355893 By contrast, the induction of other genes, such as 2¡ì-5¡ì oligoadenylate synthetase (OAS) and double-stranded-RNA-dependent protein kinase (PKR) is totally dependent on ISGF3, which cannot directly activate the IFN-alpha/beta genes.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c74 : 1
stoichiometry:c75 : 1
m1636*0.1
nodelay
--
0
PMID: 11790540, 10875919, 9501984 In fibroblasts, IFN-alpha/beta expression is observed even after serum starvation, and IFN-alpha expression in these cells is dependent on IFN-beta for an as-yet-unknown reason.
p32
p32
cso30:i:ME_Binding
cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c76 : 1
stoichiometry:c77 : 1
stoichiometry:c78 : 1
m3258*m3373*0.1
nodelay
--
0
PMID: 11790540 More recently, we found that the IFN-beta gene is induced in bone marrow macrophages upon stimulation by RANK ligand (receptor activator of NF-kappaB ligand) as a negative regulator of osteoclast differentiation, and that this induction is not dependent on IRFs but on RANKL-induced c-Fos, one of the essential transcriptional factors for osteoclast differentiation.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c79 : 1
stoichiometry:c80 : 1
m32*0.1
nodelay
--
0
PMID: 11790540 More recently, we found that the IFN-beta gene is induced in bone marrow macrophages upon stimulation by RANK ligand (receptor activator of NF-kappaB ligand) as a negative regulator of osteoclast differentiation, and that this induction is not dependent on IRFs but on RANKL-induced c-Fos, one of the essential transcriptional factors for osteoclast differentiation.
p34
p34
cso30:i:ME_GeneExpression
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c83 : 1
stoichiometry:c84 : 1
m221*0.1
nodelay
--
0
PMID: 11790540 More recently, we found that the IFN-beta gene is induced in bone marrow macrophages upon stimulation by RANK ligand (receptor activator of NF-kappaB ligand) as a negative regulator of osteoclast differentiation, and that this induction is not dependent on IRFs but on RANKL-induced c-Fos, one of the essential transcriptional factors for osteoclast differentiation.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c82 : 1
stoichiometry:c81 : 1
m93203*0.1
nodelay
--
0
PMID: 11790540 More recently, we found that the IFN-beta gene is induced in bone marrow macrophages upon stimulation by RANK ligand (receptor activator of NF-kappaB ligand) as a negative regulator of osteoclast differentiation, and that this induction is not dependent on IRFs but on RANKL-induced c-Fos, one of the essential transcriptional factors for osteoclast differentiation.
p36
p36
cso30:i:ME_GeneExpression
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c86 : 1
stoichiometry:c85 : 1
m14*0.1
nodelay
--
0
PMID: 11790540, 9541017, 9660935, 9446577 We also speculate that IFN-beta represents the prototype IFN gene, which is subject to induction by a various factors such as IRF-3, c-Fos and NF-kappaB.
p37
p37
cso30:i:CE_CellDifferentiation
cso30:i:CC_Extracellular
--
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c87 : 1
stoichiometry:c88 : 1
m221*0.1
nodelay
--
0
PMID: 11790540 More recently, we found that the IFN-beta gene is induced in bone marrow macrophages upon stimulation by RANK ligand (receptor activator of NF-kappaB ligand) as a negative regulator of osteoclast differentiation, and that this induction is not dependent on IRFs but on RANKL-induced c-Fos, one of the essential transcriptional factors for osteoclast differentiation.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c14 : 1
stoichiometry:c89 : 1
m17*0.1
nodelay
--
0
PMID: 11790540 The latter mediates activation of the IRF-1 gene by its binding to GAS (IFN-gamma-activated site).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c21 : 1
stoichiometry:c91 : 1
m13*0.1
nodelay
--
0
PMID: 11790540, 8197455 ISGF3 binds to cis elements, termed IFN-stimulated response elements (ISREs; consensus sequence A/GNGAAANNGAAACT), which usually reside within the promoter region of IFN-inducible genes [5].
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c11 : 1
stoichiometry:c13 : 1
stoichiometry:c12 : 1
m1357*m18*0.1
nodelay
--
0
PMID: 11790540 The IFN-alpha/beta stimulation of the homologous receptor complex, termed IFNAR, leads to the formation of two transcriptional activator complexes: IFN-alpha-activated factor (AAF), which is a homodimer of signal transducer and activator of transcription (Stat)1; and IFN-stimulated gene factor 3 (ISGF3), which comprises Stat1, Stat2 and a member of the IRF family, IRF-9 (also known as p48).
p40
p40
cso30:i:ME_Binding
cso30:i:CC_Cytosol
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c93 : 1
stoichiometry:c94 : 1
stoichiometry:c95 : 1
m19324*m19325*0.1
nodelay
--
0
--
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c15 : 1
stoichiometry:c90 : 1
stoichiometry:c16 : 1
m20*m6*0.1
nodelay
--
0
PMID: 11790540 The latter mediates activation of the IRF-1 gene by its binding to GAS (IFN-gamma-activated site).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c17 : 1
stoichiometry:c18 : 1
m19*0.1
nodelay
--
0
PMID: 11790540 The latter mediates activation of the IRF-1 gene by its binding to GAS (IFN-gamma-activated site).
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c19 : 1
stoichiometry:c92 : 1
stoichiometry:c20 : 1
m21*m33*0.1
nodelay
--
0
PMID: 11790540, 8197455 ISGF3 binds to cis elements, termed IFN-stimulated response elements (ISREs; consensus sequence A/GNGAAANNGAAACT), which usually reside within the promoter region of IFN-inducible genes [5].
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c23 : 1
stoichiometry:c22 : 1
m22*0.1
nodelay
--
0
PMID: 11790540, 11355893 The former activates several IFN-inducible genes including IRF-7.
--
and
mass
coefficient1:0.1
coefficient2:1.0
stoichiometry:c24 : 1
stoichiometry:c25 : 1
stoichiometry:c26 : 1
m970*m21*0.1
nodelay
--
0
PMID: 11790540, 2342456, 7687740 ISREs are also known to bind and be activated by IRF-1.
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:InputAssociation
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--
cso30:c:InputProcess
threshold
--
0
1,
--
cso30:c:OutputProcess
threshold
--
0
1,
--